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2010
Pestian JP. The Last Word: Machine Learning Analysis of Suicide Note. American Association of Suicidology. Proceedings Orlando, FL, April 30, 2010.
Pestian JP, Matykiewicz P. Development of a Suicide Notes Corpus for Integration Into Advanced Clinical Decision Support. In proceedings of World Congress of Behavioral and Cognitive Therapies, Boston, MA, June 2010.
Pestian JP. A Conversation with Edwin Shneidman, Ph.D. Suicide and Life Threatening Behavior. 40:4 516-23. 2010.
Pestian JP, Nasrallah H, Matykiewicz P, Bennet A, Leenaars A. Suicide Note Classification Using Natural Language Processing: A Content Analysis. Biomedical Informatics Insights. 3 19-28. 2010.
D'Avolio L, Demner-Fushman D, Chapman W, Pestian JP. An Introduction to Clinical Natural Language Processing: Primer Series. American Medical Informatics Association, Nov. 13, 2010, Washington, DC.
2009
Pestian JP, Matykiewicz P, Kowatch R, Grupp-Phelan J, Mazlack L, Leenaars A. Suicide note classification using natural language processing: A content analysis. Proceedings of the American Association of Suicidology, San Francisco, April 18, 2009, p 97.
Pestian JP, Spencer M, Matykiewicz P, Zhang K, Vinks S, Glauser T. Personalizing Drug Selection Using Advanced Clinical Decision Support: A Case Study. Biomedical Informatics Insight. (2) 19-29. 2009.
Demner-Fushman D, Ananiadou S, Cohen KB, Pestian JP, Tsujii J, Webber B. Themes in biomedical natural language processing. BioNLP. 1-2. 2009.
Matykiewicz P, Pestian JP, Duch W. Clustering semantic spaces of suicide notes and newsgroups articles. Proceedings of ACL, BioNLP 179-184. 2009.
Matykiewicz P, Duch W, Zender PM, Crutcher KA, Pestian JP. Neurocognitive Approach to Clustering of PubMed Query Results. ed. Mario K, Kasabov N, Coghill G, in Advances in Neuro-Information Processing, Springer, Heidelberg, Lecture Notes in Computer Science, 5507: pp 70-79.
Zender PM, Pestian JP, Matkiewicz PM, Glauser TC. Visual Language For Representing Scientific Concepts. Information Design Journal. [in press].
Pestian JP, Friedman C, Hurdle J, Chapman W. Applying Natural Language Processing in the Clinical Setting. American Medical Informatics Association, Nov 2009, San Francisco, in Proceedings.
D'Avolio L, Demner-Fushman D, Chapman W, Pestian JP. Natural Language Processing Tutorial, Nov 2009, San Francisco, in Proceedings.
Matykiewicz P, Duch W, Zender PM, Crutcher KA, Pestian JP. Neurocognitive approach to clustering of PubMed query results. Köppen, M., Kasabov, N., Coghill, G. Lecture Notes in Computer Science 550, 2009.
2008
Pestian JP, Matykiewicz P, Grupp-Phelan J, Arszman-Lavanier S, Combs J, Kowatch R. Using natural language processing to classify suicide notes. AMIA Annu Symp Proc. 6:1091. Nov 2008.
Pestian JP, Matykiewicz P, Leenaars A, Grupp-Phelan J, Arszman-Lavanier S, Combs S, Kowatch R. Distinguishing between completer and simulated suicide notes: A comparison of machine learning methods. In Proceedings Association of Computational Linguistics, Columbus, OH June 2008.
Duch W, Matykiewicz P, Pestian JP. Neurolinguistic approach to natural language processing with applications to medical text analysis. Neural Netw. 21(10):500-510. Dec, 2008.
Demner-Fushman D, Ananiadou S, Cohen KB, Pestian JP, Tsujii J, Webber B. Themes in biomedical natural language processing. Bioinformatics. 9 Suppl 11:S1. Nov 19, 2008.
Duch W, Matykiewicz P, Pestian JP. Neurolinguistic approach to vector representation of medical concepts. Advances in neural networks research. p. 3110-15. Jun 7, 2008.
Pestian JP, Matykiewicz P. Classification of suicide notes using natural language processing. In Themes in biomedical natural language processing. BMC Bioinformatics. 9 Suppl 11:S1; p. 96-98. Nov 19, 2008.
Other Significant Publications
Duch W, Matykiewicz P, Pestian JP. Neurolinguistic approach to vector representation of medical concepts. Proc. of the 20th Int. Joint Conference on Neural Networks (IJCNN), 2007 Aug 12-17; Orlando: IEEE Press. p. 1808.
Duch W, Matykiewicz P, Pestian JP. Towards understanding of natural language: neurocognitive inspirations. In: J. Marques de Sá et al., editors: Artificial neural networks - ICANN 2007, Proceedings, Part II: Springer-Verlag LNCS 4669. p. 953–62.
Pestian JP, Brew C, Matykiewicz PM, Hovermale DJ, Johnson N, Cohen KB, Duch WA. Shared Task Involving Multilabel Classification of Clinical Free Text. Proceedings of ACL BioNLP, pp 97-104 Prague, June 2007.
Rajan J, Davis KC, Matykiewicz P, Duch W, Pestian JP. Medical acronym disambiguation using online sources. Enterprise Information Systems and Web Technologies. 123-30. 2007.
Bertonnel K, Demner-Fushman D, Friedman C, Hirshman L, Pestian JP. Biological, translation, and clinical processing. Proceedings of ACL BioNLP, pp 3-8, Prague, June, 2007.
Pestian JP, Itert L, Anderson C, Duch W. Preparing clinical text for use in biomedical research. J Database Manage. 17(2):1-11. Apr-Jun, 2006.
Matykiewicz P, Pestian JP, Duch W. Unambiguous concept mapping in radiology reports: graphs of consistent concepts. AMIA Annu Symp Proc. 2006 Nov; Washington, DC. p. 1024.
Matykiewicz P, Duch W, Pestian JP. Non ambiguous concept mapping in medical domain. Lecture Notes in Computer Science 2006, pp 941-950 Springer Berlin.
