At the dawn: cell-free DNA fragmentomics and gene regulation.
Liu, Y.
British Journal of Cancer.
2022;
126:379-390.
FinaleDB: a browser and database of cell-free DNA fragmentation patterns.
Zheng, H; Zhu, MS; Liu, Y.
Computer Applications in the Biosciences.
2021;
37:2502-2503.
Expanded encyclopaedias of DNA elements in the human and mouse genomes.
Abascal, F; Acosta, R; Addleman, NJ; Adrian, J; Afzal, V; Aken, B; Akiyama, JA; Jammal, OA; Amrhein, H; Anderson, SM; et al.
Nature.
2020;
583:699-710.
Perspectives on ENCODE.
Abascal, F; Acosta, R; Addleman, NJ; Adrian, J; Afzal, V; Aken, B; Akiyama, JA; Jammal, OA; Amrhein, H; Anderson, SM; et al.
Nature.
2020;
583:693-698.
Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA.
Wan, N; Weinberg, D; Liu, TY; Niehaus, K; Ariazi, EA; Delubac, D; Kannan, A; White, B; Bailey, M; Bertin, M; et al.
BMC Cancer.
2019;
19.
Joint profiling of DNA methylation and chromatin architecture in single cells.
Li, G; Liu, Y; Zhang, Y; Kubo, N; Yu, M; Fang, R; Kellis, M; Ren, B.
Nature Methods.
2019;
16:991-993.
Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation.
Gamazon, ER; Segrè, AV; van de Bunt, M; Wen, X; Xi, HS; Hormozdiari, F; Ongen, H; Konkashbaev, A; Derks, EM; Aguet, F; et al.
Nature Genetics.
2018;
50:956-967.
Evidence of reduced recombination rate in human regulatory domains.
Liu, Y; Sarkar, A; Kheradpour, P; Ernst, J; Kellis, M.
Genome Biology.
2017;
18.
Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease.
Stranger, BE; Brigham, LE; Hasz, R; Hunter, M; Johns, C; Johnson, M; Kopen, G; Leinweber, WF; Lonsdale, JT; McDonald, A; et al.
Nature Genetics.
2017;
49:1664-1670.
Estimating the causal tissues for complex traits and diseases.
Ongen, H; Brown, AA; Delaneau, O; Panousis, NI; Nica, AC; GTEx Consortium, ; Dermitzakis, ET.
Nature Genetics.
2017;
49:1676-1683.