Barski Lab

Publications

Nguyen, NNM; Brady, AE; Russi, A; Pham, G; Li, B; Turner, LH; Kotliar, M; Barski, A; Sun, X; Way, SS. Maternal Krüppel-like factor 2 (KLF2)+ CD4 T cells promote fertility and fetal tolerance. Proceedings of the National Academy of Sciences of the United States of America. 2026; 123(13):e2519393123.

Katko, A; Korinfskaya, S; Bejjani, AT; Owoeye, SM; Yang, ZF; Rudrapatna, AN; Potter, S; Wayman, JA; Kotliar, M; Kottyan, LC; Barski, A; Miraldi, ER. Gene regulatory network determinants of rapid recall in human memory CD4+ T cells. Cell reports. 2026; 45(4):117103.

Felton, JM; Edsall, LE; Troutman, TD; Mack, L; Kotliar, M; Morgenstern, NB-B; Psaila, AM; Rochman, M; Klingler, AM; Osswald, GA; Barski, A; Quinlan, KGR; Weirauch, MT; Rothenberg, ME. Epigenetic and transcriptional programming of murine eosinophils in the esophagus. Nature Communications. 2025; 16(1):10454.

Rochman, Y; Kotliar, M; Klingler, AM; Rochman, M; Alameh, M-G; Melamed, JR; Osswald, GA; Caldwell, JM; Felton, JM; Mack, LE; Hargis, J; Lewkowich, IP; Barski, A; Weissman, D; Rothenberg, ME. Allergen-specific mRNA-lipid nanoparticle therapy for prevention and treatment of experimental allergy in mice. Journal of Clinical Investigation. 2025; 135(21).

Smith, S; Kotliar, M; Wunderlich, M; Wellendorf, A; Das, S; Mizukawa, B; Barski, A; Rai, S; Cancelas, J; Nayak, R. Chromatin remodeler SATB2 thorough Bmi1/PRC1 activity controls transformation and reprogramming of ph+ B-cell progenitors. Blood. 2025; 146(Supplement 1):5032-5032.

Peters, AL; Depasquale, EAK; Begum, G; Roskin, KM; Kotliar, M; Barski, A; Salomonis, N; Shi, T; Ranganathan, S; Woodle, ES; Hildeman, DA. Single-cell transcriptional landscape of liver transplant rejection reveals tissue persistence of clonally expanded, treatment-resistant T cells. American Journal of Transplantation. 2025; 25(11):2345-2360.

Lin, S; Kotliar, M; Vallabh, S; Ptasinska, A; Assi, SA; Wunderlich, M; Bonifer, C; Barski, A; Mulloy, JC. Fusion-specific chromatin profiles mediate transcriptional heterogeneity in MLL-rearranged acute lymphoblastic leukemia. Blood advances. 2025; 9(4):856-861.

Johansen, AKZ; Kasam, RK; Vagnozzi, RJ; Lin, S-CJ; Gomez-Arroyo, J; Shittu, A; Bowers, SLK; Kuwabara, Y; Grimes, KM; Warrick, K; Sargent, MA; Baldwin, TA; Quaggin, SE; Barski, A; Molkentin, JD. Transcription Factor 21 Regulates Cardiac Myofibroblast Formation and Fibrosis. Circulation Research. 2025; 136(1):44-58.

Kotliar, M; Kartashov, A; Barski, A. Accelerating Single-Cell Sequencing Data Analysis with SciDAP: A User-Friendly Approach. Methods in Molecular Biology. 2025; 2880:255-292.

Brown, AP; Parameswaran, S; Cai, L; Elston, S; Pham, C; Barski, A; Weirauch, MT; Ji, H. Silencing TET1 expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells. Environmental Epigenetics. 2025; 11(1):dvaf007.

Ben-Baruch Morgenstern, N; Rochman, M; Kotliar, M; Dunn, JLM; Mack, L; Besse, J; Natale, MA; Klingler, AM; Felton, JM; Caldwell, JM; Barski, A; Rothenberg, ME. Single-cell RNA-sequencing of human eosinophils in allergic inflammation in the esophagus. Journal of Allergy and Clinical Immunology. 2024; 154(4):974-987.

Proper, SP; Dwyer, AT; Appiagyei, A; Felton, JM; Ben-Baruch Morgenstern, N; Marlman, JM; Kotliar, M; Barski, A; Troutman, TD; Rothenberg, ME; Mersha, TB; Azouz, NP. Aryl hydrocarbon receptor and IL-13 signaling crosstalk in human keratinocytes and atopic dermatitis. Frontiers in Allergy. 2024; 5:1323405.

Potter, SJ; Zhang, L; Kotliar, M; Wu, Y; Schafer, C; Stefan, K; Boukas, L; Qu'd, D; Bodamer, O; Simpson, BN; Barski, A; Lindsley, AW; Bjornsson, HT. KMT2D regulates activation, localization, and integrin expression by T-cells. Frontiers in Immunology. 2024; 15:1341745.

Rochman, Y; Kotliar, M; Ben-Baruch Morgenstern, N; Barski, A; Wen, T; Rothenberg, ME. TSLP shapes the pathogenic responses of memory CD4+ T cells in eosinophilic esophagitis. Science Signaling. 2023; 16(802):eadg6360.

Maezawa, S; Yukawa, M; Hasegawa, K; Sugiyama, R; Iizuka, M; Hu, M; Sakashita, A; Vidal, M; Koseki, H; Barski, A; Defalco, T; Namekawa, SH. PRC1 suppresses a female gene regulatory network to ensure testicular differentiation. Cell Death and Disease. 2023; 14(8):501.

Stefan, K; Barski, A. Cis-regulatory atlas of primary human CD4+ T cells. BMC Genomics. 2023; 24(1):253.

Brusilovsky, M; Rochman, M; Shoda, T; Kotliar, M; Caldwell, JM; Mack, LE; Besse, JA; Chen, X; Weirauch, MT; Barski, A; Rothenberg, ME. Vitamin D receptor and STAT6 interactome governs oesophageal epithelial barrier responses to IL-13 signalling. Gut. 2023; 72(5):834-845.

Cazares, TA; Rizvi, FW; Iyer, B; Chen, X; Kotliar, M; Bejjani, AT; Wayman, JA; Donmez, O; Wronowski, B; Parameswaran, S; Kottyan, LC; Barski, A; Weirauch, MT; Prasath, VBS; Miraldi, ER. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PLoS Computational Biology. 2023; 19(1):e1010863.

Nayak, RC; Chang, KH; Singh, AK; Kotliar, M; Desai, M; Wellendorf, AM; Wunderlich, M; Bartram, J; Mizukawa, B; Cuadrado, M; Dexheimer, P; Barski, A; Bustelo, XR; Nassar, NN; Cancelas, JA. Nuclear Vav3 is required for polycomb repression complex-1 activity in B-cell lymphoblastic leukemogenesis. Nature Communications. 2022; 13(1):3056.

Korinfskaya, S; Kotliar, M; Katko, A; Hildeman, D; Miraldi, ER; Barski, A. Role of transcription factor RUNX1 in the maintenance of T helper cell epigenome and rapid recall response. Journal of Immunology. 2022; 208(Supplement_1):56.13-56.13.