Hay, SB; Ferchen, K; Chetal, K; Grimes, HL; Salomonis, N.
The Human Cell Atlas bone marrow single-cell interactive web portal.
Experimental Hematology.
2018;
68:51-61.
Modur, V; Singh, N; Mohanty, V; Chung, E; Muhammad, B; Choi, K; Chen, X; Chetal, K; Ratner, N; Salomonis, N; et al.
Defective transcription elongation in a subset of cancers confers immunotherapy resistance.
Nature Communications.
2018;
9.
Churko, JM; Garg, P; Treutlein, B; Venkatasubramanian, M; Wu, H; Lee, J; Wessells, QN; Chen, S; Chen, W; Chetal, K; et al.
Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis.
Nature Communications.
2018;
9.
Muench, DE; Ferchen, K; Velu, CS; Pradhan, K; Chetal, K; Chen, X; Weirauch, MT; Colmenares, C; Verma, A; Salomonis, N; et al.
SKI controls MDS-associated chronic TGF-β signaling, aberrant splicing, and stem cell fitness.
Blood.
2018;
132:e24-e34.
Lu, Y; Xavier-Ferrucio, J; Wang, L; Zhang, P; Grimes, HL; Venkatasubramanian, M; Chetal, K; Aronow, B; Salomonis, N; Krause, DS.
The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification.
Cell Reports.
2018;
25:2083-2093.e4.
Hayashi, Y; Zhang, Y; Yokota, A; Yan, X; Liu, J; Choi, K; Li, B; Sashida, G; Peng, Y; Xu, Z; et al.
Pathobiological Pseudohypoxia as a Putative Mechanism Underlying Myelodysplastic Syndromes.
Cancer Discovery.
2018;
8:1438-1457.
DePasquale, EA K; Dexheimer, P; Schnell, D; Ferchen, K; Hay, S; Valiente-Alandí, Í; Blaxall, B; Grimes, L; Salomonis, N.
cellHarmony: Cell-level matching and holistic comparison of single-cell transcriptomes.
2018.
Muench, D; Ferchen, K; Pham, G; Hay, S; Zhang, K; Myers, K; Kappes, D; Way, SS; Salomonis, N; Grimes, HL.
3121 Severe Congenital Neutropenia-Associated Mutations Reveal Stage-Specific GFI1-Dependent Checkpoints in Myeloid Development.
Experimental Hematology.
2018;
64.
Muench, D; Ferchen, K; Olsson, A; Dwivedi, P; Greis, K; Verma, A; Salomonis, N; Grimes, HL.
3122 Understanding Early Stage Myelodysplastic Syndrome Pathobiology.
Experimental Hematology.
2018;
64.
Yáñez, A; Coetzee, S; Olsson, A; Muench, D; Berman, B; Hazelett, D; Salomonis, N; Grimes, HL; Goodridge, H.
3195 Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes.
Experimental Hematology.
2018;
64.
Grimes, H; Venkatasubramanian, M; Chou, C; Olsson, A; Chen, X; Chetal, K; Newkold, T; Kulkarni, A; Meyers, K; Weirauch, M; et al.
3050 Global Unsupervised Splicing Analysis of Leukemia Reveals a Persistent Prognostic Signature That Precurses Oncogenesis.
Experimental Hematology.
2018;
64.
DePasquale, EA K; Schnell, D; Valiente-Alandí, Í; Blaxall, B; Grimes, L; Singh, H; Salomonis, N.
DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets.
2018.
de Semir, D; Bezrookove, V; Nosrati, M; Dar, AA; Wu, C; Shen, J; Rieken, C; Venkatasubramanian, M; III, MJ R; Desprez, P; et al.
PHIP as a therapeutic target for driver-negative subtypes of melanoma, breast, and lung cancer.
Proceedings of the National Academy of Sciences of the United States of America.
2018;
115:E5766-E5775.
Matsu-ura, T; Dovzhenok, AA; Coradetti, ST; Subramanian, KR; Meyer, DR; Kwon, JJ; Kim, C; Salomonis, N; Glass, NL; Lim, S; et al.
Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa.
ACS Synthetic Biology.
2018;
7:1395-1405.
Harley, JB; Chen, X; Pujato, M; Miller, D; Maddox, A; Forney, C; Magnusen, AF; Lynch, A; Chetal, K; Yukawa, M; et al.
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity.
Nature Genetics.
2018;
50:699-707.
Presicce, P; Park, C; Senthamaraikannan, P; Bhattacharyya, S; Jackson, C; Kong, F; Rueda, CM; DeFranco, E; Miller, LA; Hildeman, DA; et al.
IL-1 signaling mediates intrauterine inflammation and chorio-decidua neutrophil recruitment and activation.
JCI insight.
2018;
3.
Lee, J; Govindarajah, V; Goddard, B; Hinge, A; Muench, DE; Filippi, M; Aronow, B; Cancelas, JA; Salomonis, N; Grimes, HL; et al.
Obesity alters the long-term fitness of the hematopoietic stem cell compartment through modulation of Gfi1 expression.
Journal of Experimental Medicine.
2018;
215:627-644.
Magella, B; Adam, M; Potter, AS; Venkatasubramanian, M; Chetal, K; Hay, SB; Salomonis, N; Potter, SS.
Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf.
Developmental Biology.
2018;
434:36-47.
Fang, J; Muto, T; Kleppe, M; Bolanos, LC; Hueneman, KM; Walker, CS; Sampson, L; Wellendorf, AM; Chetal, K; Choi, K; et al.
TRAF6 Mediates Basal Activation of NF-κB Necessary for Hematopoietic Stem Cell Homeostasis.
Cell Reports.
2018;
22:1250-1262.
Salomonis, N.
Integrative Analysis of Proteomics Data to Obtain Clinically Relevant Markers.
Methods in Molecular Biology.
2018;
1788:89-111.