Allergy and Immunology

Publications

Arora, N; Risma, K; Kwan, M; Winslow, A. Penicillin Allergy Decision & Mobile Empowerment (PADME)-Ideation and design of a novel delabeling program for children. Journal of Allergy and Clinical Immunology: In Practice. 2025.

Assa'ad, AH; Ding, L; Duan, Q; Mersha, TB; Warren, C; Bilaver, L; Ullrich, M; Wlodarski, M; Jiang, J; Choi, JJ; Tobin, MC; Mahdavinia, M; Sharma, H; Gupta, RS. Total Serum IgE in a Cohort of Children With Food Allergy. Journal of Allergy and Clinical Immunology: In Practice. 2025; 13(4):803-813.e3.

Assa'ad, A; Hershko, AY; Irani, C; Mahdavinia, M; Khan, DA; Bernstein, JA. Health disparities in the Middle East: Representative analysis of the region. Journal of Allergy and Clinical Immunology: Global. 2025; 4(1):100350.

Azucenas, C; Voulgaridou, A; Elgammal, Y; Ntoumaziou, A; Risinger, M; Seu, K; Sen, S; Kottyan, L; Salomonis, N; Kalfa, T. Erythroid-specific, inducible CDAN1∆/∆ mouse model phenocopies congenital dyserythropoietic anemia type-la. Blood. 2025; 146(Supplement 1):186-186.

Bedard, MC; Rivera-Cruz, CM; Chihanga, T; Vonhandorf, A; Tang, AL; Zender, C; Weirauch, MT; Ferris, R; Wise-Draper, TM; Adam, M; Wells, SI. A Single-Cell Transcriptome Atlas of Epithelial Subpopulations in HPV-Positive and HPV-Negative Head and Neck Cancers. Viruses. 2025; 17(4).

Berges-Gimeno, MP; Alvarez-Cuesta, E; Atanaskovic-Markovic, M; Attanassi, M; Caffareli, C; Caubet, J-C; Du Toit, G; Guzman-Melendez, A; Kuyucu, S; Madrigal-Burgaleta, R; Valluzzi, RL; Vazquez-Revuelta, P; Watts, TJ; Yamaguchi, M. Drug hypersensitivity reactions in children in clinical practice: A WAO Statement. World Allergy Organization Journal. 2025; 18(9):101087.

Bernstein, JA; Seth, A; Rao, M; Katz, JC; Singh, U; Greisner, W; Lierl, M; Prince, B; Mavunda, K; Bernstein, CK; Guan, T; Nation, AJ; Rudman Spergel, AK; Togias, A; Glazman, M. Randomized trial of ultraviolet irradiation units installed in homes of children and adolescents with asthma. Journal of Allergy and Clinical Immunology: Global. 2025; 4(2):100427.

Bonfield, M; Gray, J; Ramiriqui, A; Stevens, J; Pandey, U; Canaday, L; Feldman, HA; Zacharias, WJ; Kottyan, L; Waggoner, SN; Deshmukh, H; Steinmeyer, S. Single cell atlas of lung-resident innate lymphoid cells shows impact of age and dysbiosis on epigenetic and transcriptomic programming. Mucosal Immunology. 2026.

Bredenoord, AJ; Dellon, ES; Schlag, C; Cianferoni, A; Xia, C; Pela, T; Durrani, S; Radwan, A; Jacob-Nara, JA. Dupilumab is efficacious for eosinophilic esophagitis irrespective of prior swallowed budesonide or fluticasone, or prior treatments used alongside swallowed topical corticosteroids: results from the phase 3, randomized, placebo-controlled, LIBERTY EoE TREET trial. Expert Review of Gastroenterology and Hepatology. 2025; 19(2):197-209.

Brown, AP; Parameswaran, S; Cai, L; Elston, S; Pham, C; Barski, A; Weirauch, MT; Ji, H. Silencing TET1 expression alters the epigenomic landscape and amplifies transcriptomic responses to allergen in airway epithelial cells. Environmental Epigenetics. 2025; 11(1):dvaf007.

Brunwasser, SM; Gebretsadik, T; Satish, A; Cole, JC; Dupont, WD; Joseph, C; Bendixsen, CG; Calatroni, A; Arbes, SJ; Fulkerson, PC; Teach, SJ; Zoratti, EM; Togias, A; Hartert, TV. Caregiver worry about COVID-19 as a predictor of social mitigation behaviours and SARS-CoV-2 infection in a 12-city U.S. surveillance study of households with children. Preventive Medicine Reports. 2025; 49:102936.

Caldwell, JM; Ballaban, AY; Li, J; Maddux, R; Harris, S; Dellon, ES; Rothenberg, ME. Cendakimab (anti-IL-13) administration improves esophageal gene expression in eosinophilic esophagitis. Journal of Allergy and Clinical Immunology. 2026; 157(1):118-130.e7.

Chang, HR; Bannon, M; Opper, C; Slavotinek, A; Hijazi, G; Widmeyer, KM; Kellner, ES; Iqneibi, M; Bayart, C; Marathe, KS; Bridges, C. Neonatal Inflammatory Skin and Bowel Disease 1 (NISBD1): A Case of ADAM17 Homozygous Mutation. Pediatric Dermatology. 2025.

Collins, MH; Rothenberg, ME; Dellon, ES; Bredenoord, AJ; Hirano, I; Leung, J; Sun, X; Glotfelty, L; Shabbir, A. Dupilumab Improves Histopathologic Features in Patients With Eosinophilic Esophagitis: LIBERTY EoE TREET Study Results. Gastro Hep Advances. 2025; 4(6):100646.

Collins, MH; Pan, Z; Yang, G-Y; Arva, NC; Pletneva, MA; Martin, LJ; Aceves, S; Chehade, M; Dellon, ES; Spergel, JM; Leung, J; Katzka, DA; Furuta, GT; Rothenberg, ME. Patient-Reported Outcome Scores Are Comparable in Multiregional Versus Uniregional Eosinophilic Esophagitis. Gastro Hep Advances. 2025; 4(9):100753.

Day, ME; Duan, Q; Markham, J; Courter, JD; Risma, K; Beck, AF; Haslam, D. P-1133. Preferred (Spoken) Language was a Major Correlate of Disparate Antibiotic Prescribing in the Pediatric Outpatient Setting Throughout the COVID-19 Pandemic. Open Forum Infectious Diseases. 2025; 12(Supplement_1):ofae631.1320.

Devonshire, AL; Guilbert, T; Bauer, CS; Schmidt, H; Davis, S; Hernandez, M; Fitzpatrick, AM; Gaffin, JM; Kattan, M; De, A; Stokes, JR; Teach, SJ; Morgan, WJ; Martinez, FD. Evaluating the Impact of the COVID-19 Pandemic on Pediatric Asthma Incidence. Journal of Allergy and Clinical Immunology: In Practice. 2025; 13(8):1952-1959.

Dribin, TE; Sampson, HA; Schnadower, D; Anagnostou, A; Fox, AT; Golden, DBK; Michelson, KA; Shaker, MS; Wang, J; Alqurashi, W; Eftekhari, S; Jaffee, H; Carver, M; Camargo, CA. Non-injectable versus injectable epinephrine treatment thresholds for acute allergic reactions in the community. Journal of Allergy and Clinical Immunology: In Practice. 2025.

Dribin, TE; Sampson, HA; Anagnostou, A; Camargo, CA; Fox, AT; Golden, DBK; Michelson, KA; Shaker, MS; Wang, J; Alqurashi, W; Douglas, L; Nickels, C; Moore, RA; Schnadower, D. Epinephrine and emergency medical services activation recommendations during acute allergic reactions in community settings: International consensus report. Journal of Allergy and Clinical Immunology. 2025.

Dsilva, A; Wagner, A; Itan, M; Rhone, N; Avlas, S; Gordon, Y; Davidian, N; Sharma, S; Razravina, E; Zan-Bar, I; Varol, C; Ziegler, SF; Rothenberg, ME; Munitz, A. Distinct Roles for Thymic Stromal Lymphopoietin (TSLP) and IL-33 in Experimental Eosinophilic Esophagitis. Allergy. European Journal of Allergy and Clinical Immunology. 2025; 80(11):3095-3107.

Emmert, AS; Ruan, T; Sherenian, MG; Assa'ad, AH; Leitsinger, N; Schultz, L; Jain, VV; Sturm, PF; Jones, AC. Prevalence of metal hypersensitivity in pediatric spine surgery. Spine Deformity. 2025; 13(3):667-671.

Felton, JM; Edsall, LE; Troutman, TD; Mack, L; Kotliar, M; Morgenstern, NB-B; Psaila, AM; Rochman, M; Klingler, AM; Osswald, GA; Barski, A; Quinlan, KGR; Weirauch, MT; Rothenberg, ME. Epigenetic and transcriptional programming of murine eosinophils in the esophagus. Nature Communications. 2025; 16(1):10454.

Fernandez, E; Robson, M; Summar, G; Earl, P; Wendling, T; Wessels, M; Norton, AE; Risma, K. Serum sickness-like reactions in children taking antibiotics represent a distressing form of infection-associated urticaria and may recur unpredictably in susceptible children. Journal of Allergy and Clinical Immunology: In Practice. 2025; 13(5):1214-1216.e3.

Fleifil, Y; Gulati, R; Jennings, K; Kycia, I; Bondoc, A; Tiao, G; Geller, J; Weirauch, M; Vakili, K; Timchenko, L; Timchenko, N. β-Catenin-Cohesin Ring-CEGRs/ALCDs Axis Activation Contributes to the Development of Hepatoblastoma and Fibrolamellar HCC. Molecular Cancer Research. 2025; 23(11):901-912.

Fyolek, JP; Mahdavinia, M; Jiang, J; Bilaver, LA; Fox, S; Nimmagadda, SR; Newmark, PJ; Sharma, H; Assa'ad, A; Seed, PC; Gupta, RS; Warren, CM. Distinct skin microbiome signatures in Black and White children with food allergy and asthma. Pediatric Allergy and Immunology. 2025; 36(9):e70197.

Gill, KK; Moore, C; Nwogu, O; Kroner, JW; Chang, W-C; Burkle, J; Virolainen, SJ; Stevens, ML; Baatyrbek, A; Miraldi, ER; Martin, LJ; Andorf, S; Khurana Hershey, GK; Roskin, KM. B-Cell Repertoire of Children With Atopic Dermatitis Exhibits Altered IgE Maturation Associated With Allergic Food Sensitization. Allergy. European Journal of Allergy and Clinical Immunology. 2025.

Granitto, M; Parks, L; Shook, MS; Forney, C; Chen, X; Edsall, LE; Donmez, OA; Parameswaran, S; Fisher, KS; Zabeti, A; Lawson, LP; Weirauch, MT; Kottyan, LC. Genome-wide discovery of multiple sclerosis genetic risk variant allelic regulatory activity. G3: Genes, Genomes, Genetics. 2025; 15(11).

Ho, CN; Fjällbrant, H; Dellon, ES; Santander, C; Rothenberg, ME; Bailey, J; Mcfadden, S; Ritchie, J. Patient experience with eosinophilic esophagitis symptoms and impacts on daily life based on in-trial qualitative interviews. Journal of Patient-Reported Outcomes. 2025; 9(1):3.

Hui, D; Dudek, S; Kiryluk, K; Walunas, TL; Kullo, IJ; Wei, W-Q; Tiwari, H; Peterson, JF; Chung, WK; Davis, BH; Smith, JL; Karlson, EW; Jarvik, GP; Ritchie, MD. Risk factors affecting polygenic score performance across diverse cohorts. eLife. 2025; 12.

Hussien, H; Moore, DL; Nimri, S; Bilaver, LA; Warren, CM; Wlodarski, M; Jiang, J; Assa'ad, AH; Sharma, HP; Moy, JN; Newmark, P; Fox, S; Gupta, RS; Mahdavinia, M. The age of eczema onset and multiple food allergies. Annals of Allergy, Asthma and Immunology. 2025.

Hwee, J; Huynh, L; Pongdee, T; Rothenberg, ME; Alfonso-Cristancho, R; Da Costa Junior, W; Duh, MS. High Disease Burden and Oral Corticosteroid Use in Patients with Hypereosinophilic Syndrome and Eosinophilic Granulomatosis with Polyangiitis: Country-Level Insights into Real-World Management in Europe. Journal of Clinical Medicine. 2025; 14(12).

Hwee, J; Huynh, L; Da Costa, W; Rothenberg, ME; Duh, MS; Alfonso-Cristancho, R. Steroid-sparing benefits of biologic use in hypereosinophilic syndrome and substantial disease burden across subtypes. Frontiers in Allergy. 2025; 6:1605397.

Johansen, AKZ; Kasam, RK; Vagnozzi, RJ; Lin, S-CJ; Gomez-Arroyo, J; Shittu, A; Bowers, SLK; Kuwabara, Y; Grimes, KM; Warrick, K; Sargent, MA; Baldwin, TA; Quaggin, SE; Barski, A; Molkentin, JD. Transcription Factor 21 Regulates Cardiac Myofibroblast Formation and Fibrosis. Circulation Research. 2025; 136(1):44-58.

Ketchem, CJ; Gabryszewski, SJ; Rothenberg, ME. Artificial intelligence in the detection and management of eosinophilic gastrointestinal diseases: Applications, challenges, and future outlook. Journal of Allergy and Clinical Immunology. 2026; 157(1):56-58.

Kim, EH; Carr, WW; Assa'ad, AH; Gogate, SU; Petroni, DH; Casale, TB; Wang, M-L; Sullivan, A; Archer, AM; Wang, O; Piscia-Nichols, C; Tuomi, L; Levin-Young, O; Dombkowski, A; Mcclintock, D. ADP101 multifood oral immunotherapy for food-allergic patients: Harmony phase 1/2 randomized clinical trial. Journal of Allergy and Clinical Immunology: Global. 2025; 4(1):100382.

Kim, J; Williams, A; Noh, H; Jasper, EA; Jones, SH; Jaworski, JA; Shuey, MM; Ruiz-Narváez, EA; Wise, LA; Palmer, JR; Wei, W-Q; Edwards, TL; Velez Edwards, DR; Hellwege, JN. Genome-wide meta-analysis identifies novel risk loci for uterine fibroids within and across multiple ancestry groups. Nature Communications. 2025; 16(1):2273.

Kliewer, KL; Abonia, JP; Aceves, SS; Atkins, D; Bonis, PA; Capocelli, KE; Chehade, M; Collins, MH; Dellon, ES; Fei, L; Sun, Q; Wechsler, JB; Yang, G-Y; Rothenberg, ME. One-food versus 4-food elimination diet for pediatric eosinophilic esophagitis: A multisite randomized trial. Journal of Allergy and Clinical Immunology. 2025; 155(2):520-532.

Kotliar, M; Kartashov, A; Barski, A. Accelerating Single-Cell Sequencing Data Analysis with SciDAP: A User-Friendly Approach. Methods in Molecular Biology. 2025; 2880:255-292.

Lang, A; Gadd, S; Gunderman, L; Lippner, E; Devonshire, A; Schipma, MJ; Berdnikovs, S; Kumar, R. Whole Blood Transcriptomics Identifies Differences in Innate Immune Pathway Expression in Infants at Risk for Peanut Allergy. Clinical and Experimental Allergy. 2025; 55(1):100-103.

Lape, M; Schnell, D; Parameswaran, S; Ernst, K; O'connor, S; Salomonis, N; Martin, LJ; Harnett, BM; Kottyan, LC; Weirauch, MT. A survey of pathogenic involvement in non-communicable human diseases. Communications Medicine. 2025; 5(1):242.

Lawson, LP; Parameswaran, S; Panganiban, RA; Constantine, GM; Weirauch, MT; Kottyan, LC. Update on the genetics of allergic diseases. Journal of Allergy and Clinical Immunology. 2025; 155(6):1738-1752.

Li, J; Rothenberg, ME; Gilvary, C; Oh, Y; Charriez, CM; Harris, S. Mo1342: CENDAKIMAB IS AN EFFECTIVE AND SAFE TREATMENT FOR PATIENTS WITH EOSINOPHILIC ESOPHAGITIS REGARDLESS OF INTERLEUKIN 13 VARIATIONS: RESULTS FROM A PHASE 3 TRIAL. Gastroenterology. 2025; 169(1):s-1108.

Lin, S; Kotliar, M; Vallabh, S; Ptasinska, A; Assi, SA; Wunderlich, M; Bonifer, C; Barski, A; Mulloy, JC. Fusion-specific chromatin profiles mediate transcriptional heterogeneity in MLL-rearranged acute lymphoblastic leukemia. Blood advances. 2025; 9(4):856-861.

Liu, C; Crew, KD; Morse, J; Linder, JE; Antoniou, AC; Carver, T; Cortopassi, J; Peterson, JF; Ta, CN; Hoell, C; Hakonarson, H; Weng, C; Chung, WK; Wiesner, GL. Implementing integrated genomic risk assessments for breast cancer: lessons learned from the Electronic Medical Records and Genomics study. JAMIA Open. 2025; 8(5):ooaf113.

Liu, H; Abedini, A; Ha, E; Ma, Z; Sheng, X; Dumoulin, B; Qiu, C; Aranyi, T; Li, S; Dittrich, N; Edwards, TL; Voight, BF; Hung, AM; Susztak, K. Kidney multiome-based genetic scorecard reveals convergent coding and regulatory variants. Science. 2025; 387(6734):eadp4753.

Martin, LJ; He, H; Spagna, D; Jenkins, S; Grashel, B; Chang, WC; Williams, L; Hammonds, M; Johansson, E; Sherenian, MG; Biagini, JM; Satish, L; Kottyan, L; Khurana Hershey, GK. Genome-wide cross-trait analysis of heterogeneous outcomes in early life atopic dermatitis. Pediatric Allergy and Immunology. 2025; 36(12):e70253.

Mcgowan, EC; Wright, BL; Ruffner, MA; Pesek, RD; Rothenberg, ME; Spergel, JM; Dellon, ES; Aceves, SS. Eosinophilic esophagitis: An allergy and immunology perspective on the updated guidelines. Journal of Allergy and Clinical Immunology. 2025; 156(2):252-258.

Mehta, P; Pan, Z; Furuta, GT; Kliewer, K. Empiric elimination diets for eosinophilic esophagitis: Barriers, facilitators, and impact on quality of life. Journal of Allergy and Clinical Immunology: In Practice. 2025; 13(2):434-436.

Melo, RCN; Rothenberg, ME. Imaging eosinophil secretory granules: From storage containers to active, immune responder organelles. Journal of Allergy and Clinical Immunology. 2025; 155(2):414-417.

Moore, CM; Secor, EA; Everman, JL; Fairbanks-Mahnke, A; Jackson, N; Pruesse, E; Diener, K; Morin, A; Arbes, SJ; Bacharier, LB; Togias, AG; Fulkerson, PC; Hartert, TV; Seibold, MA. The Common Cold Is Associated With Protection From SARS-CoV-2 Infections. Journal of Infectious Diseases. 2025; 232(6):e920-e930.

Norton, AE; Risma, K; Ben-Shoshan, M. Serum Sickness-Like Reactions in Children-Is Lifelong Avoidance Indicated? Journal of Allergy and Clinical Immunology: In Practice. 2025; 13(5):969-977.

Opper, C; Bannon, M; Devonshire, AL. Diagnosis of Immunoglobulin E-Mediated Food Allergy. Immunology and Allergy Clinics of North America. 2025; 45(3):339-354.

Osonoi, K; Sawada, A; Maekawa, Y; Yamaguchi, M; Yamada, S; Matsuyama, K; Rochman, M; Rothenberg, ME; Han, X; Matsuda, N; Suzuki, I; Tanaka, F; Fujiwara, Y; Shoda, T. Involvement of IL-13-Induced Dysregulation of BDNF-NTRK2 Pathway in Symptoms of Eosinophilic Esophagitis. Allergy. European Journal of Allergy and Clinical Immunology. 2025; 80(10):2894-2897.

Parrish, KM; First, N; Kamanova, J; Williams, TL; Johnson, S; King, J; Scanlon, KM; Azouz, NP; Mattoo, S; Skerry, C; Gestal, MC. The Bordetella type III secretion system effector BteA targets host eosinophil-epithelial signaling to promote IL-1Ra expression and persistence. Communications Biology. 2025; 8(1):1484.

Parthiban, P; Barrow, F; Wang, H; Chalise, U; Araujo, N; Souza-Neto, F; Nguyen, H; Draxler, M; Pallais, JP; Yucel, D; Rothenberg, ME; Dudley, S; Van Berlo, JH; Revelo, XS. Macrophage-Derived CCL24 Promotes Cardiac Fibrosis Via Fibroblast CCR3. Circulation Research. 2025; 137(9):1140-1156.

Peters, AL; Depasquale, EAK; Begum, G; Roskin, KM; Kotliar, M; Barski, A; Salomonis, N; Shi, T; Ranganathan, S; Woodle, ES; Hildeman, DA. Single-cell transcriptional landscape of liver transplant rejection reveals tissue persistence of clonally expanded, treatment-resistant T cells. American Journal of Transplantation. 2025; 25(11):2345-2360.

Rochman, M; Rothenberg, ME. Immune functions of the esophagus. Journal of Allergy and Clinical Immunology. 2025.

Rochman, M; Kellerman, K; Jankowski, MP; Rothenberg, ME. The oesophagus as an immune organ. Nature Reviews Gastroenterology and Hepatology. 2025; 22(9):657-667.

Rochman, Y; Kotliar, M; Klingler, AM; Rochman, M; Alameh, M-G; Melamed, JR; Osswald, GA; Caldwell, JM; Felton, JM; Mack, LE; Hargis, J; Lewkowich, IP; Barski, A; Weissman, D; Rothenberg, ME. Allergen-specific mRNA-lipid nanoparticle therapy for prevention and treatment of experimental allergy in mice. Journal of Clinical Investigation. 2025; 135(21).

Rosado-Tristani, DA; Albu, M; Chen, X; Sasse, A; Laverty, KU; Ray, D; Tam, CL; Ernst, K; Lawson, LP; Morris, QD; Hughes, TR; Weirauch, MT. CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs. Nucleic Acids Research (NAR). 2026; 54(D1):D98-D105.

Rosas-Salazar, C; Gebretsadik, T; Seibold, MA; Moore, CM; Arbes, SJ; Bacharier, LB; Brunwasser, SM; Camargo, CA; Dupont, WD; Furuta, GT; Zoratti, EM; Togias, A; Fulkerson, PC; Hartert, TV. Impact of nasal and inhaled corticosteroids on SARS-CoV-2 infection susceptibility. Journal of Allergy and Clinical Immunology. 2025; 156(5):1379-1389.e10.

Rosenthal, EA; Wei, W-Q; Luo, Y; Namjou-Khales, B; Schaid, DJ; Esplin, ED; Lape, M; Kottyan, L; Pacheco, JA; Weng, C; Grady, WM; Hsu, L; Peters, U; Jarvik, GP. Phenome-wide association study identifies multiple traits associated with a polygenic risk score for colorectal cancer. Human Genomics. 2025; 19(1):77.

Rouby, NE; Owusu-Obeng, A; Preuss, M; Lee, S; Shi, M; Lape, M; Martin, LJ; Namjou-Khales, B; Kottyan, LC; Van Driest, SL; Mosley, JD; Delbello, MP. Genome-wide associations with metabolic syndrome among UK Biobank participants reporting use of second-generation antipsychotics. Pharmacotherapy. 2025; 45(8):476-485.

Rukasin, CRF; Chow, TG; Van Stechelman, P; Norton, AE; Stone, CA; Hoelker, C; Risma, K; Koo, G. Direct challenges are safe and effective in children with low-risk allergies to oral cephalosporins. Journal of Allergy and Clinical Immunology: In Practice. 2026; 14(1):286-288.e1.

Sasse, A; Ray, D; Laverty, KU; Tam, CL; Albu, M; Zheng, H; Levdansky, Y; Lyudovyk, O; Dalal, T; Nie, K; Valkov, E; Weirauch, MT; Hughes, TR; Morris, Q. A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function. Nature Biotechnology. 2025.

Sayeed, K; Parameswaran, S; Beucler, MJ; Edsall, LE; Vonhandorf, A; Crowther, A; Donmez, OA; Hass, MR; Richards, S; Forney, CR; Zhao, B; Miller, WE; Kottyan, LC; Weirauch, MT. Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. eLife. 2025; 13.

Sayeed, K; Parameswaran, S; Beucler, MJ; Edsall, LE; Vonhandorf, A; Crowther, A; Donmez, OA; Hass, MR; Richards, S; Forney, CR; Zhao, B; Miller, WE; Kottyan, LC; Weirauch, MT. Human cytomegalovirus infection coopts chromatin organization to diminish TEAD1 transcription factor activity. eLife. 2025; 13.

Secchia, S; Beilinson, V; Chen, X; Gucwa, M; Denson, LA; Miraldi, ER; Weirauch, MT; Ikegami, K. Starvation activates ECM-remodeling gene transcription and putative enhancers in fibroblasts despite inducing quiescence. Cell reports. 2025; 44(7):115896.

Shihab, W; Jones, A; Emmert, S; Parrado, RH; Ruan, T; Leitsinger, N; Schultz, L; Jain, V; Sherenian, M; Assa'ad, A. Screening of Metal Hypersensitivity in Pediatric Spine Surgery vs. Pectus Excavatum: A Comparative Cohort Study. Cureus. 2025; 17(9):e93222.

Shook, MS; Lu, X; Chen, X; Edsall, LE; Granitto, M; Virolainen, SJ; Forney, C; Donmez, OA; Parameswaran, S; Fadden, C; Martin, LJ; Satish, L; Weirauch, MT; Kottyan, LC. Massively parallel analysis of genotype-dependent enhancer activity among atopic dermatitis genetic risk variants. Journal of Allergy and Clinical Immunology. 2025; 156(6):1600-1613.

Smith, S; Kotliar, M; Wunderlich, M; Wellendorf, A; Das, S; Mizukawa, B; Barski, A; Rai, S; Cancelas, J; Nayak, R. Chromatin remodeler SATB2 thorough Bmi1/PRC1 activity controls transformation and reprogramming of ph+ B-cell progenitors. Blood. 2025; 146(Supplement 1):5032-5032.

Uscategui Calderon, M; Spaeth, ML; Granitto, M; Gonzalez, BA; Weirauch, MT; Kottyan, LC; Yutzey, KE. GDF10 promotes rodent cardiomyocyte maturation during the postnatal period. Journal of Molecular and Cellular Cardiology. 2025; 201:16-31.

Venkatasubramanian, M; Schwartz, L; Ramachandra, N; Bennett, J; Subramanian, KR; Chen, X; Gordon-Mitchell, S; Fromowitz, A; Pradhan, K; Shechter, D; Grimes, HL; Starczynowski, DT; Verma, A; Salomonis, N. Splicing regulatory dynamics for precision analysis and treatment of heterogeneous leukemias. Science Translational Medicine. 2025; 17(797):eadr1471.

Vorontsov, IE; Kozin, I; Abramov, S; Boytsov, A; Jolma, A; Albu, M; Ambrosini, G; Faltejskova, K; Gralak, AJ; Gryzunov, N; Kolpakov, FA; Makeev, VJ; Hughes, TR; Kulakovskiy, IV. Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors. Communications Biology. 2025; 8(1):1545.

Weinhaus, B; Homan, S; Kincaid, M; Tadwalkar, A; Gu, X; Kumar, S; Slaughter, A; Zhang, J; Wu, Q; Kofron, JM; Troutman, TD; Defalco, T; Lucas, D. Differential regulation of fetal bone marrow and liver hematopoiesis by yolk-sac-derived myeloid cells. Nature Communications. 2025; 16(1):4427.

Wheeler, MES; Takahashi, Y; Lee, J; Perez, CT; Chen, X; Lee, Y; Pope, ZS; Lu, DJ; Seldin, M; Marazzi, I; Yun, H; Weirauch, MT; Byun, M. Convergent DNA methylation abnormalities at enhancers and bivalent promoters in human growth disorders. Epigenetics and Chromatin. 2025.

Wilburn, AN; Korkmaz, RÜ; Mcalees, JW; Hargis, JM; Shirdel, S; Lingel, I; Watanabe-Chailland, M; Romick-Rosendale, L; Schmudde, I; Bridges, JP; Laumonnier, Y; Rothenberg, M; Haslam, DB; Lewkowich, IP. Maternal antibiotic exposure-mediated alterations in basal, and allergen-induced lung function are associated with altered recruitment of eosinophils to the developing lung. Frontiers in Immunology. 2025; 16:1715675.

Yoneyama, Y; Zhang, R-R; Maezawa, M; Masaki, H; Kimura, M; Cai, Y; Adam, M; Parameswaran, S; Mizuno, N; Bhadury, J; Nakauchi, H; Potter, SS; Weirauch, MT; Takebe, T. Intercellular mRNA transfer alters the human pluripotent stem cell state. Proceedings of the National Academy of Sciences of the United States of America. 2025; 122(4):e2413351122.

Zhou, X; Dunham, D; Sindher, SB; Long, A; Fernandes, A; Chang, I; Assa'ad, A; Pongracic, J; Spergel, JM; Tam, J; Tilles, S; Wang, J; Boyd, SD; Chinthrajah, RS; Nadeau, KC. HLA-DR+ regulatory T cells and IL-10 are associated with success or failure of desensitization outcomes. Allergy. European Journal of Allergy and Clinical Immunology. 2025; 80(3):762-774.