Publications

Alexandrou, E; Cabrera-Salcedo, C; Labilloy, G; Tyzinski, L; Smolarek, TA; Andrew, M; Huang, Y; Backeljauw, P; Dauber, A. (2020) Algorithm-Driven Electronic Health Record Notification Enhances the Detection of Turner Syndrome. Elsevier BV. 216:227-231.

Andorf, S; Bunning, B; Tupa, D; Cao, S; Long, AJ; Borres, MP; Galli, SJ; Chinthrajah, RS; Nadeau, KC. Trends in egg specific immunoglobulin levels during natural tolerance and oral immunotherapy. Allergy: European Journal of Allergy and Clinical Immunology. 2020; 75:1454-1456.

Angueira, AR; Shapira, SN; Ishibashi, J; Sampat, S; Sostre-Colon, J; Emmett, MJ; Titchenell, PM; Lazar, MA; Lim, H; Seale, P. Early B Cell Factor Activity Controls Developmental and Adaptive Thermogenic Gene Programming in Adipocytes. Cell Reports. 2020; 30:2869-2878.e4.

Bunning, BJ; Contrepois, K; Lee-McMullen, B; Dhondalay, GK R; Zhang, W; Tupa, D; Raeber, O; Desai, M; Nadeau, KC; Snyder, MP; et al. Global metabolic profiling to model biological processes of aging in twins. Aging Cell. 2020; 19.

Cabrera-Salcedo, C; Hawkes, CP; Tyzinski, L; Andrew, M; Labilloy, G; Campos, D; Feld, A; Deodati, A; Hwa, V; Hirschhorn, JN; et al. Targeted Searches of the Electronic Health Record and Genomics Identify an Etiology in Three Patients with Short Stature and High IGF-I Levels. Hormone Research in Paediatrics: from developmental endocrinology to clinical research. 2020; 92:186-195.

Chidambaran, V; Ashton, M; Martin, LJ; Jegga, AG. Systems biology-based approaches to summarize and identify novel genes and pathways associated with acute and chronic postsurgical pain. Journal of Clinical Anesthesia. 2020; 62:109738-109738.

de Semir, D; Bezrookove, V; Nosrati, M; Scanlon, KR; Singer, E; Judkins, J; Rieken, C; Wu, C; Shen, J; Schmudermayer, C; et al. PHIP drives glioblastoma motility and invasion by regulating the focal adhesion complex. Proceedings of the National Academy of Sciences of USA. 2020; 117:9064-9073.

Deng, S; Essandoh, K; Wang, X; Li, Y; Huang, W; Chen, J; Peng, J; Jiang, D; Mu, X; Wang, C; et al. Tsg101 positively regulates P62-Keap1-Nrf2 pathway to protect hearts against oxidative damage. Redox Biology. 2020; 32:101453-101453.

DePasquale, E; Schnell, D; Chetal, K; Salomonisi, N. Identification and Removal of Doublets with DoubletDecon. 2020.

Dhondalay, GK R; Bunning, B; Bauer, RN; Barnathan, ES; Maniscalco, C; Baribaud, F; Nadeau, KC; Andorf, S. Transcriptomic and methylomic features in asthmatic and nonasthmatic twins. Allergy: European Journal of Allergy and Clinical Immunology. 2020; 75:989-992.

Diop, EH S; Boudraa, A; Prasath, VB S. Optimal Nonlinear Signal Approximations Based on Piecewise Constant Functions. Circuits, Systems, and Signal Processing. 2020; 39:2673-2694.

Fortriede, JD; Pells, TJ; Chu, S; Chaturvedi, P; Wang, D; Fisher, ME; James-Zorn, C; Wang, Y; Nenni, MJ; Burns, KA; et al. Xenbase: Deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Nucleic Acids Research. 2020; 48:D776-D782.

Glauser, T; Santel, D; DelBello, M; Faist, R; Toon, T; Clark, P; McCourt, R; Wissel, B; Pestian, J. Identifying epilepsy psychiatric comorbidities with machine learning. Acta Neurologica Scandinavica. 2020; 141:388-396.

Goyal, NK; Brown, CM; Folger, AT; Hall, ES; Van Ginkel, JB; Ammerman, RT. Adherence to Well-Child Care and Home Visiting Enrollment Associated with Increased Emergency Department Utilization. Maternal and Child Health Journal. 2020; 24:73-81.

Hinge, A; He, J; Bartram, J; Javier, J; Xu, J; Fjellman, E; Sesaki, H; Li, T; Yu, J; Wunderlich, M; et al. Asymmetrically Segregated Mitochondria Provide Cellular Memory of Hematopoietic Stem Cell Replicative History and Drive HSC Attrition. Cell Stem Cell. 2020; 26:420-430.e6.

Hoh, RA; Joshi, SA; Lee, J; Martin, BA; Varma, S; Kwok, S; Nielsen, SC A; Nejad, P; Haraguchi, E; Dixit, PS; et al. Origins and clonal convergence of gastrointestinal IgE+ B cells in human peanut allergy. Science Immunology. 2020; 5:eaay4209-eaay4209.

Holowiecki, A; Linstrum, K; Ravisankar, P; Chetal, K; Salomonis, N; Waxman, JS. Pbx4 limits heart size and fosters arch artery formation by partitioning second heart field progenitors and restricting proliferation. Development (Cambridge). 2020; 147:dev185652-dev185652.

Isaka, S; Kawanaka, H; Prasath, VB S; Aronow, BJ; Tsuruoka, S. (2020) Development of a web based image annotation tool for lung immunofluorescent confocal images.

Lazow, MA; Johnson, SL; Johnson, ND; Breneman, JC; Dexheimer, PJ; Szabo, S; Pressey, JG. Genome-driven therapy for chemotherapy-resistant metastatic CDK6-amplified osteosarcoma. JCO Precision Oncology. 2020; 4:498-504.

Lucas, D; Salomonis, N; Grimes, HL. Unraveling bone marrow architecture. Nature Cell Biology. 2020; 22:5-6.

Mandl, KD; Glauser, T; Krantz, ID; Avillach, P; Bartels, A; Beggs, AH; Biswas, S; Bourgeois, FT; Corsmo, J; Dauber, A; et al. The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Genetics in Medicine. 2020; 22:371-380.

McDaniel, CT; Panmanee, W; Winsor, GL; Gill, E; Bertelli, C; Schurr, MJ; Dongare, P; Paul, AT; Ko, SB; Lau, GW; et al. AB569, a nontoxic chemical tandem that kills major human pathogenic bacteria. Proceedings of the National Academy of Sciences of USA. 2020; 117:4921-4930.

Moore, C; Gao, B; Roskin, KM; Vasilescu, EM; Addonizio, L; Givertz, MM; Madsen, JC; Zorn, E. B cell clonal expansion within immune infiltrates in human cardiac allograft vasculopathy. American Journal of Transplantation. 2020; 20:1431-1438.

Moore, DR; Hugdahl, K; Stewart, HJ; Vannest, J; Perdew, AJ; Sloat, NT; Cash, EK; Hunter, LL. Listening Difficulties in Children: Behavior and Brain Activation Produced by Dichotic Listening of CV Syllables. Frontiers in Psychology. 2020; 11.

Muench, DE; Olsson, A; Ferchen, K; Pham, G; Serafin, RA; Chutipongtanate, S; Dwivedi, P; Song, B; Hay, S; Chetal, K; et al. Mouse models of neutropenia reveal progenitor-stage-specific defects. Nature. 2020; 582:109-114.

Neeland, MR; Andorf, S; Manohar, M; Dunham, D; Lyu, S; Dang, TD; Peters, RL; Perrett, KP; Tang, ML K; Saffery, R; et al. Mass cytometry reveals cellular fingerprint associated with IgE plus peanut tolerance and allergy in early life. Nature Communications. 2020; 11.

Niederkorn, M; Hueneman, K; Choi, K; Varney, ME; Romano, L; Pujato, MA; Greis, KD; Inoue, J; Meetei, R; Starczynowski, DT. TIFAB Regulates USP15-Mediated p53 Signaling during Stressed and Malignant Hematopoiesis. Cell Reports. 2020; 30:2776-2790.e6.

Petrany, M; Swoboda, C; Sun, C; Chetal, K; Chen, X; Weirauch, M; Salomonis, N; Millay, D. Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers. 2020.

Roskin, K; Spearman, P. HIV-1 Broadly Neutralizing Antibodies Take the Road Less Traveled, and That Makes All the Difference. Cell Host and Microbe. 2020; 27:487-488.

Roskin, KM; Jackson, KJ L; Lee, J; Hoh, RA; Joshi, SA; Hwang, K; Bonsignori, M; Pedroza-Pacheco, I; Liao, H; Moody, MA; et al. Aberrant B cell repertoire selection associated with HIV neutralizing antibody breadth. Nature Immunology. 2020; 21:199-209.

Rossi, RM; Requarth, E; Warshak, CR; Dufendach, KR; Hall, ES; DeFranco, EA. Risk Calculator to Predict Cesarean Delivery Among Women Undergoing Induction of Labor. Obstetrics and Gynecology. 2020; 135:559-568.

Rossi, RM; Wolfe, C; Brokamp, R; McAllister, JM; Wexelblatt, S; Warshak, CR; Hall, ES. Reported Prevalence of Maternal Hepatitis C Virus Infection in the United States. Obstetrics and Gynecology. 2020; 135:387-395.

Smith-Anttila, CJ A; Mason, EA; Wells, CA; Aronow, BJ; Osborne, PB; Keast, JR. Identification of a sacral, visceral sensory transcriptome in embryonic and adult mice. eNeuro. 2020; 7:ENEURO.0397-19.2019.

Srinivasan, S; Ravi, V; Sowmya, V; Krichen, M; Ben Noureddine, D; Anivilla, S; Soman, KP. (2020) Deep Convolutional Neural Network Based Image Spam Classification. IEEE. 112-117.

Szczesniak, RD; Su, W; Brokamp, C; Keogh, RH; Pestian, JP; Seid, M; Diggle, PJ; Clancy, JP. Dynamic predictive probabilities to monitor rapid cystic fibrosis disease progression. Statistics in Medicine. 2020; 39:740-756.

Venkatasubramanian, M; Chetal, K; Schnell, DJ; Atluri, G; Salomonis, N. Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF. Bioinformatics. 2020; 36:3773-3780.

Wissel, BD; Greiner, HM; Glauser, TA; Holland-Bouley, KD; Mangano, FT; Santel, D; Faist, R; Zhang, N; Pestian, JP; Szczesniak, RD; et al. Prospective validation of a machine learning model that uses provider notes to identify candidates for resective epilepsy surgery. Epilepsia. 2020; 61:39-48.

Woodle, ES; Tremblay, S; Brailey, P; Girnita, A; Alloway, RR; Aronow, B; Dasgupta, N; Ebstein, F; Kloetzel, P; Lee, MJ; et al. Proteasomal adaptations underlying carfilzomib-resistance in human bone marrow plasma cells. American Journal of Transplantation. 2020; 20:399-410.

Woodle, ES; Tremblay, S; Rossi, A; Rojas, CC; Alloway, R; Roskin, K; Allman, D; Hildeman, D. Plasma cell targeting to prevent antibody-mediated rejection. American Journal of Transplantation. 2020; 20 Suppl 4:33-41.

Yu, Y; Choi, K; Wu, J; Andreassen, PR; Dexheimer, PJ; Keddache, M; Brems, H; Spinner, RJ; Cancelas, JA; Martin, LJ; et al. NF1 patient missense variants predict a role for ATM in modifying neurofibroma initiation. Acta Neuropathologica. 2020; 139:157-174.