Biomedical Informatics

Publications

Anderst, J; Carpenter, SL; Abshire, TC; Killough, E; AAP SECTION ON HEMATOLOGY/ONCOLOGY, THE AMERICAN S, ; Consultants, ; Mendonca, EA; Downs, SM; Section on Hematology/Oncology executive committee,. Evaluation for Bleeding Disorders in Suspected Child Abuse. Pediatrics. 2022; 150.

Avellino, R; Mulet-Lazaro, R; Havermans, M; Hoogenboezem, R; Smeenk, L; Salomonis, N; Schneider, RK; Rombouts, E; Bindels, E; Grimes, L; et al. Induced cell-autonomous neutropenia systemically perturbs hematopoiesis in Cebpa enhancer-null mice. Blood Advances. 2022; 6:1406-1419.

Barrila, J; Yang, J; Franco Meléndez, KP; Yang, S; Buss, K; Davis, TJ; Aronow, BJ; Bean, HD; Davis, RR; Forsyth, RJ; et al. Spaceflight Analogue Culture Enhances the Host-Pathogen Interaction Between Salmonella and a 3-D Biomimetic Intestinal Co-Culture Model. Frontiers in cellular and infection microbiology. 2022; 12.

Bayram, U; Lee, W; Santel, D; Minai, A; Clark, P; Glauser, T; Pestian, J. Toward Suicidal Ideation Detection with Lexical Network Features and Machine Learning. 2022; 4.

Bharati, S; Podder, P; Thanh, DN H; Prasath, VB S. Dementia classification using MR imaging and clinical data with voting based machine learning models. Multimedia Tools and Applications. 2022; 81:25971-25992.

Boopathiraja, S; Punitha, V; Kalavathi, P; Prasath, VB S. COMPUTATIONAL 2D and 3D MEDICAL IMAGE DATA COMPRESSION MODELS. Archives of Computational Methods in Engineering. 2022; 29:975-1007.

Bradford, L; Ross, MK; Minso, J; Cernelc-Kohan, M; Shayan, K; Wong, SS; Li, X; Rivier, L; Jegga, AG; Deutsch, GH; et al. Interstitial lung disease in children with Rubinstein-Taybi syndrome. Pediatric Pulmonology. 2022; 57:264-272.

Chen, J; Navais, PS; Xu, H; Flatley, C; Bacelis, J; Monangi, N; Kacerovsky, M; Hallman, M; Teramo, K; Lawlor, D; et al. Interrogating the causal effects of maternal circulating CRP on gestational duration and birth weight. 2022.

Clarkston, K; Karns, R; Jegga, AG; Sharma, M; Fox, S; Ojo, BA; Minar, P; Walters, TD; Griffiths, AM; Mack, DR; et al. Targeted Assessment of Mucosal Immune Gene Expression Predicts Clinical Outcomes in Children with Ulcerative Colitis. Journal of Crohn's and Colitis. 2022; 16:1735-1750.

Dar, AA; Bezrookove, V; Nosrati, M; Ice, R; Patino, JM; Vaquero, EM; Parrett, B; Leong, SP; Kim, KB; Debs, RJ; et al. Bromodomain inhibition overcomes treatment resistance in distinct molecular subtypes of melanoma. Proceedings of the National Academy of Sciences of the United States of America. 2022; 119.

Dedhia, PH; Chen, K; Song, Y; Larose, E; Imbus, JR; Peissig, PL; Mendonca, EA; Schneider, DF. Ambiguous and Incomplete: Natural Language Processing Reveals Problematic Reporting Styles in Thyroid Ultrasound Reports. Methods of Information in Medicine. 2022; 61:11-18.

Desai, DA; Rao, VJ; Jegga, AG; Dhandapany, PS; Sadayappan, S. Heterogeneous Distribution of Genetic Mutations in Myosin Binding Protein-C Paralogs. Frontiers in Genetics. 2022; 13.

Díaz, PC; Chou, C; Mistry, J; Khan, MD; Salomonis, N; Grimes, HL; Trowbridge, J. 3055 – METALLOTHIONEIN 1 (MT1) AS A TARGETABLE DEPENDENCY IN ACUTE MYELOID LEUKEMIA. Experimental Hematology. 2022; 111.

Ebrahimpour, A; Ahir, M; Wang, M; Jegga, AG; Bonnen, MD; Eissa, NT; Montesi, SB; Raghu, G; Ghebre, YT. Combination of esomeprazole and pirfenidone enhances antifibrotic efficacy in vitro and in a mouse model of TGFβ-induced lung fibrosis. Scientific Reports. 2022; 12.

Ehrman, JM; Merchan-Sala, P; Ehrman, LA; Chen, B; Lim, HW; Waclaw, RR; Campbell, K. Formation of the Mouse Internal Capsule and Cerebral Peduncle: A Pioneering Role for Striatonigral Axons as Revealed in Isl1 Conditional Mutants. Journal of Neuroscience. 2022; 42:3344-3364.

Feng, Y; Cai, L; Hong, W; Zhang, C; Tan, N; Wang, M; Wang, C; Liu, F; Wang, X; Ma, J; et al. Rewiring of 3D Chromatin Topology Orchestrates Transcriptional Reprogramming and the Development of Human Dilated Cardiomyopathy. Circulation. 2022; 145:1663-1683.

Feria, MG; Chang, C; Ticona, E; Moussa, A; Zhang, B; Ballena, I; Azañero, R; Ticona, C; De Cecco, CN; Fichtenbaum, CJ; et al. Pro-Inflammatory Alterations of Circulating Monocytes in Latent Tuberculosis Infection. Open Forum Infectious Diseases. 2022; 9.

Fitzsimmons, L; Dewan, M; Dexheimer, JW. Diversity in Machine Learning: A Systematic Review of Text-Based Diagnostic Applications. Applied Clinical Informatics. 2022; 13:569-582.

Gaddis, N; Fortriede, J; Guo, M; Bardes, EE; Kouril, M; Tabar, S; Burns, K; Ardini-Poleske, ME; Loos, S; Schnell, D; et al. LungMAP Portal Ecosystem: Systems-Level Exploration of the Lung. American Journal of Respiratory Cell and Molecular Biology. 2022.

Garrett, MC; Albano, R; Carnwath, T; Shah, S; Woo, D; Lamba, M; Plas, DR; Paranjpe, A; Roskin, K; Zhao, C; et al. Chromatin structure predicts survival in glioma patients. Scientific Reports. 2022; 12.

Ghandikota, S; Jegga, AG. gene2gauss: A multi-view gaussian gene embedding learner for analyzing transcriptomic networks. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2022; 2022:206-215.

Ghandikota, S; Sharma, M; Ediga, HH; Madala, SK; Jegga, AG. Consensus Gene Co-Expression Network Analysis Identifies Novel Genes Associated with Severity of Fibrotic Lung Disease. International Journal of Molecular Sciences. 2022; 23.

Ghandikota, S; Yella, JK; Jegga, AG. (2022) Multimodal feature learning framework for disease biomarker discovery. 00:3252-3259.

Gorski, JK; Mendonça, EA; Showalter, CD. The Impact of Diagnostic Decisions on Patient Experience in the Pediatric Emergency Department. Pediatric Emergency Care. 2022; 38:e644-e649.

Gracia-Maldonado, G; Clark, J; Burwinkel, M; Greenslade, B; Wunderlich, M; Salomonis, N; Leone, D; Gatti, E; Pierre, P; Kumar, AR; et al. LAMP-5 is an essential inflammatory-signaling regulator and novel immunotherapy target for mixed lineage leukemia-rearranged acute leukemia. Haematologica. 2022; 107:803-815.

Gutiérrez-Sacristán, A; Serret-Larmande, A; Hutch, MR; Sáez, C; Aronow, BJ; Bhatnagar, S; Bonzel, CL; Cai, T; Devkota, B; Hanauer, DA; et al. Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic. JAMA Network Open. 2022; 5.

H. Tran, Y; Coven, SL; Park, S; Mendonca, EA. Social determinants of health and pediatric cancer survival: A systematic review. Pediatric Blood and Cancer. 2022; 69.

Jackson, CM; Demmert, M; Mukherjee, S; Isaacs, T; Thompson, R; Chastain, C; Gray, J; Senthamaraikannan, P; Presicce, P; Chetal, K; et al. A potent myeloid response is rapidly activated in the lungs of premature Rhesus macaques exposed to intra-uterine inflammation. Mucosal Immunology. 2022; 15:730-744.

Jee, JJ; Yang, L; Shivakumar, P; Xu, PP; Mourya, R; Thanekar, U; Yu, P; Zhu, Y; Pan, Y; Wang, H; et al. Maternal regulation of biliary disease in neonates via gut microbial metabolites. Nature Communications. 2022; 13.

Jin, K; Schnell, D; Li, G; Salomonis, N; Prasath, VB S; Szczesniak, R; Aronow, BJ. CellDrift: inferring perturbation responses in temporally sampled single-cell data. Briefings in Bioinformatics. 2022; 23.

Jin, K; Schnell, D; Li, G; Salomonis, N; Surya Prasath, VB; Szczesniak, R; Aronow, B. CellDrift: Inferring Perturbation Responses in Temporally-Sampled Single Cell Data. 2022.

Jurickova, I; Bonkowski, E; Angerman, E; Novak, E; Huron, A; Akers, G; Iwasawa, K; Braun, T; Hadar, R; Hooker, M; et al. Eicosatetraynoic Acid and Butyrate Regulate Human Intestinal Organoid Mitochondrial and Extracellular Matrix Pathways Implicated in Crohn's Disease Strictures. Inflammatory Bowel Diseases. 2022; 28:988-1003.

Jurickova, I; Huron, A; Angerman, E; Bonkowski, E; Jegga, A; Haberman, Y; Denson, L. EICOSATETRAYNOIC ACID REGULATES MITOCHONDRIAL AND EXTRA-CELLULAR MATRIX GENE EXPRESSION AND TISSUE STIFFNESS IN A HUMAN INTESTINAL ORGANOID MODEL OF ILEAL CROHN’S DISEASE. Inflammatory Bowel Diseases. 2022; 28:s62-s63.

Jurickova, I; Huron, A; Angerman, E; Bonkowski, E; Jegga, A; Haberman, Y; Denson, L. EICOSATETRAYNOIC ACID REGULATES MITOCHONDRIAL AND EXTRA-CELLULAR MATRIX GENE EXPRESSION AND TISSUE STIFFNESS IN A HUMAN INTESTINAL ORGANOID MODEL OF ILEAL CROHN’S DISEASE. Gastroenterology. 2022; 162:s62-s63.

Kadam, P; Pandya, S; Phansalkar, S; Sarangdhar, M; Petkar, N; Kotecha, K; Garg, D. FVEstimator: A novel food volume estimator Wellness model for calorie measurement and healthy living. Measurement: Journal of the International Measurement Confederation. 2022; 198.

Kalim, KW; Yang, JQ; Wunderlich, M; Modur, V; Nguyen, P; Li, Y; Wen, T; Davis, AK; Verma, R; Lu, QR; et al. Targeting of Cdc42 GTPase in regulatory T cells unleashes antitumor T-cell immunity. Journal for ImmunoTherapy of Cancer. 2022; 10.

Kanbar, L; Barzman, DH; Dexheimer, J; Osborn, A; Combs, JS; Diler, RS; Sorter, MT; Zhang, B; Hemphill, R; Decker, RM; et al. 2.7 Automated Detection of School Violence Using Linguistic Features. Journal of the American Academy of Child and Adolescent Psychiatry. 2022; 61:s184-s185.

Kanbar, LJ; Wissel, B; Ni, Y; Pajor, N; Glauser, T; Pestian, J; Dexheimer, JW. Implementation of Machine Learning Pipelines for Clinical Practice: Development and Validation Study. JMIR Medical Informatics. 2022; 10.

Karlebach, G; Aronow, B; Baylin, SB; Butler, D; Foox, J; Levy, S; Meydan, C; Mozsary, C; Saravia-Butler, AM; Taylor, DM; et al. Betacoronavirus-specific alternate splicing. Genomics. 2022; 114.

Katsuma, D; Kawanaka, H; Prasath, VB S; Aronow, BJ. Data Augmentation Using Generative Adversarial Networks for Multi-Class Segmentation of Lung Confocal IF Images. Journal of Advanced Computational Intelligence and Intelligent Informatics. 2022; 26:138-146.

Kaushik, A; Dunham, D; Han, X; Do, E; Andorf, S; Gupta, S; Fernandes, A; Kost, LE; Sindher, SB; Yu, W; et al. CD8+ T cell differentiation status correlates with the feasibility of sustained unresponsiveness following oral immunotherapy. Nature Communications. 2022; 13.

Kershner, LJ; Choi, K; Wu, J; Zhang, X; Perrino, M; Salomonis, N; Shern, JF; Ratner, N. Multiple Nf1 Schwann cell populations reprogram the plexiform neurofibroma tumor microenvironment. JCI insight. 2022; 7.

Kidwell, KM; Reiter-Purtill, J; Decker, K; Howarth, T; Doland, F; Zeller, MH. Stress and eating responses in adolescent females predisposed to obesity: A pilot and feasibility study. Appetite. 2022; 179.

Kovaleski, C; Courter, JD; Ghulam, E; Hagedorn, PA; Haslam, DB; Kurowski, EM; Rudloff, J; Szczesniak, R; Dexheimer, JW. Aligning Provider Prescribing With Guidelines for Soft Tissue Infections. Pediatric Emergency Care. 2022; 38:e1063-e1068.

Krietsch, KN; Duraccio, KM; Zhang, N; Saelens, BE; Howarth, T; Combs, A; Beebe, DW. Earlier bedtimes and more sleep displace sedentary behavior but not moderate-to-vigorous physical activity in adolescents. Sleep Health. 2022; 8:270-276.

Kumar, A; Elko, E; Bruno, SR; Mark, ZF; Chamberlain, N; Mihavics, BK; Chandrasekaran, R; Walzer, J; Ruban, M; Gold, C; et al. Inhibition of PDIA3 in club cells attenuates osteopontin production and lung fibrosis. Thorax. 2022; 77:669-678.

Leighton Grimes, H; Ferchen, K; Salomonis, N; Song, B; Zhang, X. 2007 – IDENTIFICATION AND ISOLATION OF HEMATOPOIETIC STEM CELLS AND PROGENITORS WITH DISCRETE DEVELOPMENTAL GENE EXPRESSION PROGRAMS. Experimental Hematology. 2022; 111.

Ley, SL; Kidwell, KM; Van Dyk, TR; Orkin, S; Odar Stough, C; Howarth, T; Goetz, AR; Xanthakos, SA; Bramlage, K; Mouzaki, M; et al. Insight Into the Adolescent Patient Experience With Nonalcoholic Fatty Liver Disease. Journal of Pediatric Gastroenterology and Nutrition. 2022; 75:88-96.

Li, Q; Li, Y; Huang, W; Wang, X; Liu, Z; Chen, J; Fan, Y; Peng, T; Sadayappan, S; Wang, Y; et al. Loss of Lipocalin 10 Exacerbates Diabetes-Induced Cardiomyopathy via Disruption of Nr4a1-Mediated Anti-Inflammatory Response in Macrophages. Frontiers in Immunology. 2022; 13.

Li, S; Rajapuri, AS; Felix Gomez, GG; Schleyer, T; Mendonca, EA; Thyvalikakath, TP. How Do Dental Clinicians Obtain Up-To-Date Patient Medical Histories? Modeling Strengths, Drawbacks, and Proposals for Improvements. 2022; 4.

Liu, L; Wu, DT Y; Spooner, SA; Ni, Y. Development and Evaluation of an Automated Approach to Detect Weight Abnormalities in Pediatric Weight Charts. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2022; 2021:783-792.

Locker, KC S; Kachapati, K; Wu, Y; Bednar, KJ; Adams, D; Patel, C; Tsukamoto, H; Heuer, LS; Aronow, BJ; Herr, AB; et al. Endosomal Sequestration of TLR4 Antibody Induces Myeloid-Derived Suppressor Cells and Reverses Acute Type 1 Diabetes. Diabetes. 2022; 71:470-482.

Lozano, PM; Lane-Fall, M; Franklin, PD; Rothman, RL; Gonzales, R; Ong, MK; Gould, MK; Beebe, TJ; Roumie, CL; Guise, JM; et al. Training the next generation of learning health system scientists. Learning Health Systems. 2022; 6.

Mast, AE; Wolberg, AS; Gailani, D; Garvin, MR; Alvarez, C; Miller, JI; Jones, P; Aronow, B; Jacobson, D. Response to comment on 'SARS-CoV-2 suppresses anticoagulant and fibrinolytic gene expression in the lung'. eLife. 2022; 11.

McDaniel, MM; Chawla, AS; Jain, A; Meibers, HE; Saha, I; Gao, Y; Jain, V; Roskin, K; Way, SS; Pasare, C. Effector memory CD4+ T cells induce damaging innate inflammation and autoimmune pathology by engaging CD40 and TNFR on myeloid cells. Science Immunology. 2022; 7.

McSweeney, D; Gabriel, R; Jin, K; Pang, ZP; Aronow, B; Pak, CH. CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons. iScience. 2022; 25.

Mendonca, EA; Richesson, RL; Hochheiser, H; Cooper, DM; Bruck, MN; Berner, ES. Informatics education for translational research teams: An unrealized opportunity to strengthen the national research infrastructure. Journal of Clinical and Translational Science. 2022; 6.

Milgrom, ZZ; Severance, TS; Scanlon, CM; Carson, AT; Janota, AD; Burns, JL; Vik, TA; Duwve, JM; Dixon, BE; Mendonca, EA. Enhancing cancer prevention and survivorship care with a videoconferencing model for continuing education: a mixed-methods study to identify barriers and incentives to participation. 2022; 5.

Milgrom, ZZ; Severance, TS; Scanlon, CM; Carson, AT; Janota, AD; Vik, TA; Duwve, JM; Dixon, BE; Mendonca, EA. An evaluation of an Extension for Community Healthcare Outcomes (ECHO) intervention in cancer prevention and survivorship care. BMC Medical Informatics and Decision Making. 2022; 22.

Milgrom, ZZ; Severance, TS; Scanlon, CM; Carson, AT; Janota, AD; Vik, TA; Duwve, JM; Dixon, BE; Mendonca, EA. Building Cancer Control Capacity in Health Professionals Through Telementoring: A Survey Study of a Cancer Prevention and Survivorship Care ECHO Program. Studies in Health Technology and Informatics. 2022; 290:1122-1123.

Mullins, N; Kang, JE; Campos, AI; Coleman, JR I; Edwards, AC; Galfalvy, H; Levey, DF; Lori, A; Shabalin, A; Starnawska, A; et al. Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors. Biological Psychiatry. 2022; 91:313-327.

Mun, KS; Nathan, JD; Jegga, AG; Wikenheiser-Brokamp, KA; Abu-El-Haija, M; Naren, AP. Personalized medicine approaches in cystic fibrosis related pancreatitis. American Journal of Translational Research. 2022; 14:7612-7620.

Mun, KS; Nathan, JD; Lin, TK; Elder, DA; Jegga, AG; Naren, AP; Abu-El-Haija, M. Is There a Benefit From Islet Autotransplantation in Patients With Type 1 Diabetes Mellitus Undergoing Total Pancreatectomy?. Pancreas. 2022; 51:399-403.

Noll, JG; Haag, AC; Shenk, CE; Wright, MF; Barnes, JE; Kohram, M; Malgaroli, M; Foley, DJ; Kouril, M; Bonanno, GA. An observational study of Internet behaviours for adolescent females following sexual abuse. Nature Human Behaviour. 2022; 6:74-87.

Pilarczyk, M; Fazel-Najafabadi, M; Kouril, M; Shamsaei, B; Vasiliauskas, J; Niu, W; Mahi, N; Zhang, L; Clark, NA; Ren, Y; et al. Connecting omics signatures and revealing biological mechanisms with iLINCS. Nature Communications. 2022; 13.

Rochman, M; Wen, T; Kotliar, M; Dexheimer, PJ; Morgenstern, NB B; Caldwell, JM; Lim, HW; Rothenberg, ME. Single-cell RNA-Seq of human esophageal epithelium in homeostasis and allergic inflammation. JCI insight. 2022; 7.

Rogerson, C; He, T; Rowan, C; Tu, W; Mendonca, E. Ten year trends in hospital encounters for pediatric asthma: an Indiana experience. The Journal of asthma research. 2022; 59:2421-2430.

Rogerson, CM; Carroll, AE; Tu, W; He, T; Schleyer, TK; Rowan, CM; Owora, AH; Mendonca, EA. Frequency and Correlates of Pediatric High-Flow Nasal Cannula Use for Bronchiolitis, Asthma, and Pneumonia. Respiratory Care. 2022; 67:976-984.

Romano, L; Seu, KG; Papoin, J; Muench, DE; Konstantinidis, D; Olsson, A; Schlum, K; Chetal, K; Chasis, JA; Mohandas, N; et al. Erythroblastic islands foster granulopoiesis in parallel to terminal erythropoiesis. Blood. 2022; 140:1621-1634.

Rosselot, AE; Park, M; Kim, M; Matsu-Ura, T; Wu, G; Flores, DE; Subramanian, KR; Lee, S; Sundaram, N; Broda, TR; et al. Ontogeny and function of the circadian clock in intestinal organoids. EMBO Journal. 2022; 41.

Santoleri, D; Lim, HW; Emmett, MJ; Stoute, J; Gavin, MJ; Sostre-Colón, J; Uehara, K; Welles, JE; Liu, KF; Lazar, MA; et al. Global-run on sequencing identifies Gm11967 as an Akt-dependent long noncoding RNA involved in insulin sensitivity. iScience. 2022; 25.

Schmidt, AF; Schnell, DJ; Eaton, KP; Chetal, K; Kannan, PS; Miller, LA; Chougnet, CA; Swarr, DT; Jobe, AH; Salomonis, N; et al. Fetal maturation revealed by amniotic fluid cell-free transcriptome in rhesus macaques. JCI insight. 2022; 7.

Severance, TS; Milgrom, Z; Carson, A; Scanlon, CM; Chauhan O’Brien, R; Anderson, B; Robertson, M; Janota, A; Coven, SL; Mendonca, EA; et al. Cancer prevention, screening, and survivorship ECHO: A pilot experience with an educational telehealth program. Cancer Medicine. 2022; 11:238-244.

Siegel, R; Khoury, P; Spooner, SA; Stackpole, K; Allen, N; Kirk, S; Kharofa, R. Body Mass Index Increased at a Large Midwestern Children's Hospital during the COVID-19 Pandemic. Childhood Obesity. 2022.

Sole-Navais, P; Flatley, C; Steinthorsdottir, V; Vaudel, M; Juodakis, J; Chen, J; Laisk, T; LaBella, A; Westergaard, D; Bacelis, J; et al. Genetic effects on the timing of parturition and links to fetal birth weight. 2022.

Solomon, M; Song, BA; Govindarajah, V; Good, S; Bartram, J; Cancelas, J; Filippi, M; Salomonis, N; Grimes, HL; Reynaud, D. Hematopoietic Flt3+ Multipotent Progenitors Are Organized in Discrete Functionally and Hierarchically Distinct Populations. Blood. 2022; 140:1981-1982.

Song, B; Ferchen, K; Chou, C; Zhang, X; Steele, H; Herro, R; Salomonis, N; Grimes, HL. 3194 – LIVE BACTERIAL LIGANDS PROGRAM CORE HEMATOPOIETIC GENE EXPRESSION. Experimental Hematology. 2022; 111.

Stevens, J; Steinmeyer, S; Bonfield, M; Peterson, L; Wang, T; Gray, J; Lewkowich, I; Xu, Y; Du, Y; Guo, M; et al. The balance between protective and pathogenic immune responses to pneumonia in the neonatal lung is enforced by gut microbiota. Science Translational Medicine. 2022; 14.

Strong, H; Reiter-Purtill, J; Howarth, T; West-Smith, L; Zeller, MH. Early COVID-19 Vaccine Hesitancy Characteristics in Mothers Following Bariatric Surgery. Obesity Surgery. 2022; 32:852-860.

Sun, X; Perl, AK; Li, R; Bell, SM; Sajti, E; Kalinichenko, VV; Kalin, TV; Misra, RS; Deshmukh, H; Clair, G; et al. A census of the lung: CellCards from LungMAP. Developmental Cell. 2022; 57:112-145.e2.

Sveen, W; Dewan, M; Dexheimer, JW. The Risk of Coding Racism into Pediatric Sepsis Care: The Necessity of Antiracism in Machine Learning. Journal of Pediatrics. 2022; 247:129-132.

Toth, A; Steinmeyer, S; Kannan, P; Gray, J; Jackson, CM; Mukherjee, S; Demmert, M; Sheak, JR; Benson, D; Kitzmiller, J; et al. Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primates. Science Translational Medicine. 2022; 14.

Tursi, AR; Saba, NK; Dunham, D; Manohar, M; Peters, RL; Saffery, R; Koplin, JJ; Nadeau, KC; Neeland, MR; Andorf, S. Mass cytometry analysis of blood from peanut-sensitized tolerant and clinically allergic infants. Scientific data. 2022; 9.

Voulgaridou, A; Elgammal, Y; Husami, A; Emberesh, S; Seu, K; Ramamoorthy, M; Trump, L; Barasa, N; Nelson, AS; Lorsbach, RB; et al. De Novo Germline DHX38 Variant Associated with Alternative Splicing of Multiple Transcripts in Iron-Related Pathways in a Patient with Atypical Congenital Dyserythropoietic Anemia with Ring Sideroblasts. Blood. 2022; 140:1234-1235.

Ware, SM; Bhatnagar, S; Dexheimer, PJ; Wilkinson, JD; Sridhar, A; Fan, X; Shen, Y; Tariq, M; Schubert, JA; Colan, SD; et al. The genetic architecture of pediatric cardiomyopathy. American Journal of Human Genetics. 2022; 109:282-298.

Weaver, KN; Chen, J; Shikany, A; White, PS; Prada, CE; Gelb, BD; Cnota, JF. Prevalence of Genetic Diagnoses in a Cohort With Valvar Pulmonary Stenosis. Circulation: Genomic and Precision Medicine. 2022; 15.

Weber, GM; Hong, C; Xia, Z; Palmer, NP; L’Yi, S; Keller, MS; Murphy, SN; Gutiérrez-Sacristán, A; Bonzel, CL; Serret-Larmande, A; et al. International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. npj Digital Medicine. 2022; 5.

Wiley, K; Findley, L; Goldrich, M; Rakhra-Burris, TK; Stevens, A; Williams, P; Bult, CJ; Chisholm, R; Deverka, P; Ginsburg, GS; et al. A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. Journal of the American Medical Informatics Association : JAMIA. 2022; 29:1342-1349.

Wiley, KK; Mendonca, E; Blackburn, J; Menachemi, N; Groot, MD; Vest, JR. Quantifying Electronic Health Record Data Quality in Telehealth and Office-Based Diabetes Care. Applied Clinical Informatics. 2022; 13:1172-1180.

Williams, JG; Joshi, R; Haslam, D; Yehya, N; Jones, RL; Paranjpe, A; Pujato, M; Roskin, KM; Lahni, PM; Wong, HR; et al. Multi-omic characterization of pediatric ARDS via nasal brushings. Respiratory Research. 2022; 23.

Wu, DT Y; Van Camp, PJ; Kim, A; Parikh, M; Liu, L; Mahdi, M; Ni, Y; Spooner, SA. User-Centered Evaluation of a Visual Annotation Tool for Rapid Assessment of Pediatric Weight Entry Errors. . 2022.

Wunderlich, M; Chen, J; Sexton, C; Manning, N; Byerly, L; O’Brien, E; Perentesis, J; Mulloy, J; Mizukawa, B. PDX models of relapsed pediatric AML preserve global gene expression patterns and reveal therapeutic targets. 2022.

Xia, S; Zhao, YC; Guo, L; Gong, H; Wang, YK; Ma, R; Zhang, BK; Sheng, Y; Sarangdhar, M; Noguchi, Y; et al. Do antibody-drug conjugates increase the risk of sepsis in cancer patients? A pharmacovigilance study. Frontiers in Pharmacology. 2022; 13.

Xu, X; Jin, K; Bais, AS; Zhu, W; Yagi, H; Feinstein, TN; Nguyen, PK; Criscione, JD; Liu, X; Beutner, G; et al. Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease. Cell Stem Cell. 2022; 29:840-855.e7.

Yang, Z; Shikany, A; Ni, Y; Zhang, G; Weaver, KN; Chen, J. Using deep learning and electronic health records to detect Noonan syndrome in pediatric patients. Genetics in Medicine. 2022; 24:2329-2337.

Yella, J; Ghandikota, S; Jegga, A. GraMDTA: Multimodal Graph Neural Networks for Predicting Drug-Target Associations. 2022.

Yella, JK; Ghandikota, SK; Jegga, AG. (2022) GraMDTA: Multimodal Graph Neural Networks for Predicting Drug-Target Associations. 00:1957-1965.

Yella, JK; Jegga, AG. MGATRx: Discovering Drug Repositioning Candidates Using Multi-View Graph Attention. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2022; 19:2596-2604.

Yella, JK; Jegga, AG. 2.32 Magic bullets: Drug repositioning and drug combinations. Comprehensive Pharmacology. 2022.

You, D; Jung, BC; Villivalam, SD; Lim, HW; Kang, S. JMJD8 is a Novel Molecular Nexus Between Adipocyte-Intrinsic Inflammation and Insulin Resistance. Diabetes. 2022.

Zanobetti, A; Ryan, PH; Coull, B; Brokamp, C; Datta, S; Blossom, J; Lothrop, N; Miller, RL; Beamer, PI; Visness, CM; et al. Childhood Asthma Incidence, Early and Persistent Wheeze, and Neighborhood Socioeconomic Factors in the ECHO/CREW Consortium. JAMA Pediatrics. 2022; 176:759-767.

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