Biomedical Informatics

Publications

Bartram, J; Treichel, S; Song, BA; Xu, J; Sharma, D; Nasr, W; Frangiosa, M; Harley, A; Nemkov, T; D'alessandro, A; Salomonis, N; Grimes, HL; Filippi, M-D. Activation of a branched-chain amino acid rheostat restores replication-dependent hematopoietic stem cell fitness. Cell Stem Cell. 2026; 33(2):289-305.e6.

Brandão, CFS; Fernandes, GCVR; Neto, FC; Generoso Júnior, JR. Structured Clinical Reasoning Through a Formative Web-OSCE Model: A Scalable Innovation Within a Simulation-Based Undergraduate Curriculum. Journal of General Internal Medicine. 2026.

Chinnachinnanagari, AR; Debsarkar, SS; Prasath, VBS. Pathology Public Datasets for Artificial Intelligence: A Systematic Review. J Imaging Inform Med. 2026.

Cobeña-Reyes, J; Wanjalla, CN; Feria, MG; Simmons, J; Temu, T; Nochowicz, C; Arafat, SY; Kityo, C; Erem, G; Longenecker, CT; Andorf, S; Huaman, MA. Characterization of Distinct Monocyte Subtypes and Immune Features Associated with HIV, Tuberculosis, and Coronary Artery Disease in a Ugandan Cohort Using Mass Cytometry. Pathogens and Immunity. 2026; 11(1):14-38.

Colom Díaz, PA; Mistry, JJ; Young, KA; Chou, C-H; Boyer, N; Levine, RL; Salomonis, N; Grimes, HL; Trowbridge, JJ. Metallothionein 1 mediates growth and survival of Dnmt3a;Npm1-mutant acute myeloid leukemia. Haematologica. 2026; 111(1):373-378.

Conderino, S; Kirchner, HL; Thorpe, LE; Divers, J; Hirsch, AG; Nordberg, CM; Schwartz, BS; Zhang, L; Cai, B; Rudisill, C; Zaganjor, I; Pavkov, ME; Rosenman, M; Titus, AR. Multi-site analysis of COVID-19 and new-onset diabetes reveals need for improved sensitivity of EHR-based COVID-19 phenotypes-a DiCAYA Network analysis. Journal of the American Medical Informatics Association : JAMIA. 2026; 33(3):710-718.

Debsarkar, SS; Prasath, VBS. A multi-expert deep learning framework with LLM-guided arbitration for multimodal histopathology prediction. Computerized Medical Imaging and Graphics. 2026; 128:102704.

Debsarkar, SS; Aronow, B; Prasath, VBS. Unsupervised biomarker discovery leveraging foundation models: a multimodal approach to clinical data integration. Neural Computing and Applications. 2026; 38(5):93.

Deliberato, RO; Tachinardi, U; Mendonça, EA. Why do intensive care units in countries without board-certified clinical informatics specialists risk falling behind in the Artificial Intelligence era? Revista Brasileira de Terapia Intensiva. 2026; 38:e20260314.

Farrow, E; Rao, S; Han, SJY; Chang, X; Huynh, C; Brugmann, SA; Lim, H-W; Tchieu, J; Campbell, K; Gebelein, B. An inducible system to study the regulatory functions of GSX2 in human lateral ganglionic eminence-like progenitors. Developmental Biology. 2026; 532:35-51.

Ferreira, JMG; Marra, VS; Generoso, JR; Tudino, CH; Hsieh, MK; Pardo, I; Campagnoli, PS; Ceccon, LE; Celeghini, PD; Zancopé, BB; Perencevich, EN; Goto, M; Edmond, MB; Marra, AR. Quality of hand hygiene performance: A systematic literature review. American Journal of Infection Control. 2026; 54(2):192-209.

Finer, G; Yacu, GS; Khan, MD; Zhou, Y; Gadhvi, G; Ward, SE; Sayed, M; Gomez, RA; Sequeira-Lopez, MLS; Park, J-S; Lim, H-W; Quaggin, SE; Winter, DR. The transcription factor Tcf21 is necessary for adoption of cell fates by Foxd1+ stromal progenitors during kidney development. American Journal of Physiology - Renal Physiology. 2026; 330(4):F347-F364.

Gill, KK; Moore, C; Nwogu, O; Kroner, JW; Chang, W-C; Burkle, J; Virolainen, SJ; Stevens, ML; Baatyrbek, A; Miraldi, ER; Martin, LJ; Andorf, S; Khurana Hershey, GK; Roskin, KM. B-Cell Repertoire of Children With Atopic Dermatitis Exhibits Altered IgE Maturation Associated With Allergic Food Sensitization. Allergy. European Journal of Allergy and Clinical Immunology. 2026; 81(2):513-523.

Glaser, K; Depasquale, EAK; Berklite, L; Hickner, BT; Rao, P; Patel, RH; Badachhape, AA; Roy, S; Schepers, E; Timchenko, NA; Takebe, T; Woodfield, SE; Vasudevan, SA; Bondoc, AJ. Investigating the oncogenic role of aberrant EZH2 in hepatoblastoma. Scientific Reports. 2026; 16(1).

Gutfreund, MC; Callado, GY; Pardo, I; Hsieh, MK; Celeghini, PD; Lopes, GOV; Marra, PS; Cheng, YR; Kobayashi, T; Pinho, JRR; Amgarten, DE; Malta, FDM; Edmond, MB; Marra, AR. Metagenomic next-generation sequencing in pediatric infectious disease diagnosis: A comprehensive systematic literature review and meta-analysis. Diagnostic Microbiology and Infectious Disease. 2026; 114(4):117248.

Kahn, J; Luttmann-Gibson, H; Blossom, J; Ryan, PH; Coull, BA; Datta, S; Hartert, T; Zanobetti, A; Ramratnam, SK; Mendonça, EA; Shiroshita, A; Zoratti, EM; Gern, JE; Gold, DR. Redlining, Community Wealth, and Air Pollution: A Tale of Three Cities-Boston, Nashville, and Detroit. Journal of Urban Health. 2026.

Kamsheh, AM; Ware, SM; Bhatnagar, S; Martin, LJ; Lee, TM; Towbin, JA; Kantor, PF; Lal, AK; Bansal, N; Ballweg, JA; Colan, SD; Aronow, BJ; Canter, CE; Lipshultz, SE. Cardiomyopathy-Associated Pathogenic Variants in Pediatric Myocarditis: A Study From the Pediatric Cardiomyopathy Registry. Circulation: Heart Failure. 2026; 19(1):e013104.

Koenig, ZT; Eswar, S; Tsuda, S; Schuldt, N; Chougnet, CA; Forde, B; Andorf, S; Tilburgs, T. Decidual CD4 Effector Memory and Resident Memory T Cells Respond to Cord Blood Allo-Antigens. American Journal of Reproductive Immunology. 2026; 95(2):e70213.

Kottyan, LC; Richards, S; Tracy, ME; Lawson, LP; Kottyan, IC; Curwin, A; Cobb, B; Esslinger, S; Gerwe, M; Morgan, J; Muglia, L; Harley, JB; Chepelev, I; Kaufman, KM. Sequencing and health data resource of children of African ancestry. Genetics in Medicine. 2026; 28(3):101660.

Ladha, FA; Vanderpluym, C; Mondragon-Estrada, E; Avillach, P; Brueckner, M; Chung, WK; Cnota, JF; Gelb, BD; Lewis, M; Liu, C; Tristani-Firouzi, M; Wagner, M; Morton, SU; Newburger, JW. Prothrombin G20210A and Factor V Leiden Variants Are Not Associated With Thrombotic Events in Congenital Heart Disease: An Observational Trial. Journal of the American Heart Association. 2026; 15(6):e046959.

Nguyen, V; Harper, A; Azuero, M; Castellanos, I; He, S; Hochman, ML; Wenceslau, CF; Chen, D-B; Jegga, AG; Wang, Y; Fan, D; Nelson, JS; Tan, W. Vascular Organoids Derived from Capillary malformation-induced Pluripotent Stem Cells Exhibit Disease-Relevant Phenotypes. Stem Cell Reviews and Reports. 2026; 22(1):668-675.

Park, S; Coven, SL; Tran, YH; Mendonca, EA. Examining the Impact of Social Determinants of Health on Pediatric Central Nervous System Tumor Outcomes Through Medical Record Linkage. American Journal of Clinical Oncology: Cancer Clinical Trials. 2026; 49(2):82-88.

Rogerson, CM; Bartlett, CW; Price, J; Li, L; Mendonca, EA; Grannis, S. Derivation and validation of an algorithm for maternal-child linkage in electronic health records. Journal of the American Medical Informatics Association : JAMIA. 2026; 33(2):451-456.

Roskin, KM; Meeds, HL; Krishnan, JM; Juhascik, M; Cafardi, JM; Brown, JL; Freiermuth, C; Lyons, MS; Sherman, KE; Blackard, JT. Single cell RNA transcriptome response to fentanyl use in persons with HIV infection. Scientific Reports. 2026; 16(1).

Shiroshita, A; Zanobetti, A; Coull, BA; Ryan, PH; Datta, S; Blossom, J; Oken, E; Gern, JE; Luttmann-Gibson, H; Mendonça, EA; Rivera-Spoljaric, K; Zoratti, EM; Hartert, TV; Gold, DR. Individual and combined effects of indoor home exposures and ambient PM2.5 during early life on childhood asthma in us birth cohort studies. Environmental Epidemiology. 2026; 10(1):e443.

Singh, P; Patel, PK; Kasam, RK; Lawson, R; Ediga, HH; Jegga, AG; Madala, SK. PLK1 inhibition by volasertib suppresses key transcriptional regulators underlying fibroblast activation and pulmonary fibrosis. American Journal of Physiology - Lung Cellular and Molecular Physiology. 2026; 330(2):L132-L144.

Wang, G-Y; Xia, S; Sarangdhar, M; Noguchi, Y; Zhou, J-F. Prioritization of adverse events related to integrase inhibitors and NNRTIs: a disproportionality analysis using data from the FAERS database. Journal of Antimicrobial Chemotherapy. 2026; 81(4).

Ware, K; Peter, J; Yazell, J; Thapa, C; Taranov, A; Bedolla, A; Distel, C; Lammich, S; Feederle, R; Sülzen, A; Liddelow, S; Roskin, K; Luo, Y. Inhibition of TGF-β signaling in microglia stimulates hippocampal adult neurogenesis and reduces anxiety-like behavior in adult mice. Nature Communications. 2026; 17(1):1440.

Wissel, BD; Percy, Z; Zachem, TJ; Beaulieu-Jones, B; Kohane, IS; Goldstein, SL; Gecili, E; Dexheimer, JW. Heterogenous effect of automated alerts on mortality. Journal of the American Medical Informatics Association : JAMIA. 2026; 33(3):653-662.