Biomedical Informatics

Publications

Allen, KS; Hood, DR; Cummins, J; Kasturi, S; Mendonca, EA; Vest, JR. Natural language processing-driven state machines to extract social factors from unstructured clinical documentation. JAMIA Open. 2023; 6:ooad024.

Basu, J; Olsson, A; Ferchen, K; Titerina, EK; Chetal, K; Nicolas, E; Czyzewicz, P; Levchenko, D; Ge, L; Hua, X; et al. ThPOK is a critical multifaceted regulator of myeloid lineage development. Nature Immunology. 2023; 24:1295-1307.

Beaumont, RN; Flatley, C; Vaudel, M; Wu, X; Chen, J; Moen, GH; Skotte, L; Helgeland, Ø; Solé-Navais, P; Banasik, K; et al. Genome-wide association study of placental weight identifies distinct and shared genetic influences between placental and fetal growth. Nature Genetics. 2023; 55:1807-1819.

Bedard, MC; Chihanga, T; Carlile, A; Jackson, R; Brusadelli, MG; Lee, D; VonHandorf, A; Rochman, M; Dexheimer, PJ; Chalmers, J; et al. Single cell transcriptomic analysis of HPV16-infected epithelium identifies a keratinocyte subpopulation implicated in cancer. Nature Communications. 2023; 14:1975.

Bell, MB; Ouyang, X; Shelton, AK; Huynh, NV; Mueller, T; Chacko, BK; Jegga, AG; Chatham, JC; Miller, CR; Darley-Usmar, V; et al. Relationships between gene expression and behavior in mice in response to systemic modulation of the O-GlcNAcylation pathway. Journal of Neurochemistry. 2023; 165:682-700.

Boopathiraja, S; Kalavathi, P; Deoghare, S; Prasath, VB S. Near Lossless Compression for 3D Radiological Images Using Optimal Multilinear Singular Value Decomposition (3D-VOI-OMLSVD). Journal of Digital Imaging. 2023; 36:259-275.

Braun, T; Sosnovski, KE; Amir, A; BenShoshan, M; VanDussen, KL; Karns, R; Levhar, N; Abbas-Egbariya, H; Hadar, R; Efroni, G; et al. Mucosal transcriptomics highlight lncRNAs implicated in ulcerative colitis, Crohn's disease, and celiac disease. JCI insight. 2023; 8:e170181.

Cain, B; Webb, J; Yuan, Z; Cheung, D; Lim, HW; Kovall, RA; Weirauch, MT; Gebelein, B. Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data. Nucleic Acids Research. 2023; 51:6055-6072.

Cazares, TA; Rizvi, FW; Iyer, B; Chen, X; Kotliar, M; Bejjani, AT; Wayman, JA; Donmez, O; Wronowski, B; Parameswaran, S; et al. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. Editor, Przytycka TM. PLoS Computational Biology. 2023; 19:e1010863.

Chen, C; Huang, B; Kouril, M; Liu, J; Kim, H; Sivaganisan, S; Welge, JA; DelBello, MP. An application programming interface implementing Bayesian approaches for evaluating effect of time-varying treatment with R and Python. Frontiers in Computer Science. 2023; 5:1183380.

Dagliati, A; Strasser, ZH; Hossein Abad, ZS; Klann, JG; Wagholikar, KB; Mesa, R; Visweswaran, S; Morris, M; Luo, Y; Henderson, DW; et al. Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study. EClinicalMedicine. 2023; 64:102210.

De Loizaga, SR; Pulle, J; Rwebembera, J; Abrams, J; Atala, J; Chesnut, E; Danforth, K; Fall, N; Felicelli, N; Lapthorn, K; et al. Development and User Testing of a Dynamic Tool for Rheumatic Heart Disease Management. Applied Clinical Informatics - ACI. 2023; 14:866-877.

Dean, ST; Ishikawa, C; Zhu, X; Walulik, S; Nixon, T; Jordan, JK; Henderson, S; Wyder, M; Salomonis, N; Wunderlich, M; et al. Repression of TRIM13 by chromatin assembly factor CHAF1B is critical for AML development. Blood Advances. 2023; 7:4822-4837.

Dexheimer, PJ; Pujato, M; Roskin, KM; Weirauch, MT. VExD: a curated resource for human gene expression alterations following viral infection. Editor, McIntyre L. G3-Genes Genomes Genetics. 2023; 13:jkad176.

Dhaliwal, J; Liu, X; Reigle, J; Sharma, M; Lopez-Nunez, O; Walters, T; Collins, M; Hyams, J; Siddiqui, I; Denson, L; et al. DEVELOPMENT OF AN OPTIMAL MACHINE LEARNING MODEL USING TREATMENT NAÏVE DIAGNOSTIC PATHOLOGY IMAGES TO PREDICT STEROID-FREE CLINICAL REMISSION AT ONE YEAR IN PEDIATRIC ULCERATIVE COLITIS. Gastroenterology. 2023; 164:s72-s73.

Dhaliwal, J; Liu, X; Reigle, J; Sharma, M; Lopez-Nunez, O; Walters, T; Collins, M; Hyams, J; Siddiqui, I; Denson, L; et al. DEVELOPMENT OF AN OPTIMAL MACHINE LEARNING MODEL USING TREATMENT NAÏVE DIAGNOSTIC PATHOLOGY IMAGES TO PREDICT STEROID-FREE CLINICAL REMISSION AT ONE YEAR IN PEDIATRIC ULCERATIVE COLITIS. Inflammatory Bowel Diseases. 2023; 29:s56-s57.

Diop, EH S; Ngom, A; Prasath, VB S. Signal Approximations Based on Nonlinear and Optimal Piecewise Affine Functions. Circuits, Systems, and Signal Processing. 2023; 42:2366-2384.

Doll, JR; Moreno-Fernandez, ME; Stankiewicz, TE; Wayland, JL; Wilburn, A; Weinhaus, B; Chougnet, CA; Giordano, D; Cappelletti, M; Presicce, P; et al. BAFF and APRIL counterregulate susceptibility to inflammation-induced preterm birth. Cell Reports. 2023; 42:112352.

Elliott, KH; Balchand, SK; Paese, CL B; Chang, CF; Yang, Y; Brown, KM; Rasicci, DT; He, H; Thorner, K; Chaturvedi, P; et al. Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation. Development (Cambridge). 2023; 150:dev201237.

Ferchen, K; Salomonis, N; Grimes, HL. pyInfinityFlow: optimized imputation and analysis of high-dimensional flow cytometry data for millions of cells. Editor, Kelso J. Bioinformatics. 2023; 39:btad287.

Ferchen, K; Song, B; Potter, C; Zhang, X; Chou, C; Khodoun, M; Finkelman, FD; Salomonis, N; Grimes, HL. Th2 immune responses induced by helminth infection reprogram multilineage progenitors to produce successive waves of neutrophils, basophils, and eosinophils. Journal of immunology (Baltimore, Md. : 1950). 2023; 210:65.01.

Gafranek, JT; D’Aniello, E; Ravisankar, P; Thakkar, K; Vagnozzi, RJ; Lim, HW; Salomonis, N; Waxman, JS. Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart. Nature Communications. 2023; 14:5509.

Garrett, MC; Albano, R; Carnwath, T; Elahi, L; Behrmann, CA; Pemberton, M; Woo, D; O’Brien, E; VanCauwenbergh, B; Perentesis, J; et al. HDAC1 and HDAC6 are essential for driving growth in IDH1 mutant glioma. Scientific Reports. 2023; 13:12433.

Gaston, B; Gardner, DD; Mahan, K; Akuthota, P; Mendonca, EA; Durrington, H; Marozkina, N; Martinez-Nunez, RT; Newcomb, D; Ainsworth, B; et al. Asthma innovations from the first International Collaborative Asthma Network forum. ERJ Open Research. 2023; 9:90-2023.

Gecili, E; Brokamp, C; Rasnick, E; Afonso, PM; Andrinopoulou, ER; Dexheimer, JW; Clancy, JP; Keogh, RH; Ni, Y; Palipana, A; et al. Built environment factors predictive of early rapid lung function decline in cystic fibrosis. Pediatric Pulmonology. 2023; 58:1501-1513.

Gill, K; Moore, C; Nwogu, O; Kroner, JW; Chang, W; Stevens, ML; Kyzy, AB; Biagini, JM; Devonshire, AL; Kottyan, L; et al. B cell repertoire in children with skin barrier dysfunction supports altered IgE maturation associated with allergic food sensitization. 2023; 4:2023.02.01.526538.

Greve, K; Ni, Y; Bailes, AF; Vargus-Adams, J; Miley, AE; Aronow, B; McMahon, MM; Kurowski, BG; Mitelpunkt, A. Gross motor function prediction using natural language processing in cerebral palsy. Developmental Medicine and Child Neurology. 2023; 65:100-106.

Greve, KR; Bailes, AF; Zhang, N; Long, J; Aronow, B; Mitelpunkt, A. Outpatient hospital utilization after single event multi-level surgery in children with cerebral palsy. Editor, Byrne R; Gaebler-Spira D; Green M; Kim H. Journal of Pediatric Rehabilitation Medicine. 2023; 16:139-148.

Guarnieri, KM; Saba, NK; Schwartz, JT; Devonshire, AL; Bufford, J; Casale, TB; Rothenberg, ME; Andorf, S. Food Allergy Characteristics Associated With Coexisting Eosinophilic Esophagitis in FARE Registry Participants. Journal of Allergy and Clinical Immunology: In Practice. 2023; 11:1509-1521.e6.

Gundawar, A; Lodha, S; Vijayarajan, V; Iyer, B; Prasath, VB S. On the Performance of new Higher Order Transformation Functions for Highly Efficient Dense Layers. Neural Processing Letters. 2023; 55:10655-10668.

Guo, M; Morley, MP; Jiang, C; Wu, Y; Li, G; Du, Y; Zhao, S; Wagner, A; Cakar, AC; Kouril, M; et al. Guided construction of single cell reference for human and mouse lung. Nature Communications. 2023; 14:4566.

Halurkar, MS; Inoue, O; Mukherjee, R; Paese, CL B; Duszynski, M; Brugmann, SA; Lim, H; Sanchez-Gurmaches, J. The widely used Ucp1-CreEvdr transgene elicits complex developmental and metabolic phenotypes. 2023; 4:2023.10.20.563165.

Hampl, SE; Hassink, SG; Skinner, AC; Armstrong, SC; Barlow, SE; Bolling, CF; Avila Edwards, KC; Eneli, I; Hamre, R; Joseph, MM; et al. Clinical Practice Guideline for the Evaluation and Treatment of Children and Adolescents With Obesity. Pediatrics. 2023; 151:e2022060640.

Hampl, SE; Hassink, SG; Skinner, AC; Armstrong, SC; Barlow, SE; Bolling, CF; Avila Edwards, KC; Eneli, I; Hamre, R; Joseph, MM; et al. Clinical Practice Guideline for the Evaluation and Treatment of Children and Adolescents With Obesity. Pediatric Collections: Adolescent Health Part 1: Promoting Wellness. : American Academy of Pediatrics (AAP); American Academy of Pediatrics (AAP); 2023.

Hampl, SE; Hassink, SG; Skinner, AC; Armstrong, SC; Barlow, SE; Bolling, CF; Avila Edwards, KC; Eneli, I; Hamre, R; Joseph, MM; et al. Executive Summary: Clinical Practice Guideline for the Evaluation and Treatment of Children and Adolescents With Obesity. Pediatrics. 2023; 151:e2022060641.

Inoue, O; Goten, C; Hashimuko, D; Yamaguchi, K; Takeda, Y; Nomura, A; Ootsuji, H; Takashima, S; Iino, K; Takemura, H; et al. Single-cell transcriptomics identifies adipose tissue CD271+ progenitors for enhanced angiogenesis in limb ischemia. Cell Reports Medicine. 2023; 4:101337.

Inoue, O; Goten, C; Hashimuko, D; Yamaguchi, K; Takeda, Y; Nomura, A; Ootsuji, H; Takashima, S; Iino, K; Takemura, H; et al. Single cell transcriptomics identifies adipose tissue CD271+ progenitors for enhanced angiogenesis in limb ischemia. 2023; 4:2023.02.09.527726.

Kanbar, L; Mishra, A; Osborn, AK; Cifuentes, A; Combs, J; Sorter, MT; Dexheimer, JW; Barzman, DH. 1.2 Forecasting Best Performance with Incomplete Resources: Automated Risk Assessment of School Violence. Journal of the American Academy of Child and Adolescent Psychiatry. 2023; 62:s155.

Kanbar, LJ; Dexheimer, JW; Zahner, J; Burrows, EK; Chatburn, R; Messinger, A; Baker, CD; Schuler, CL; Benscoter, D; Amin, R; et al. Standardizing electronic health record ventilation data in the pediatric long-term mechanical ventilator-dependent population. Pediatric Pulmonology. 2023; 58:433-440.

Khandelwal, P; Lounder, DT; Bartlett, A; Haberman, Y; Jegga, AG; Ghandikota, S; Koo, J; Luebbering, N; Leino, D; Abdullah, S; et al. Transcriptome analysis in acute gastrointestinal graft-versus host disease reveals a unique signature in children and shared biology with pediatric inflammatory bowel disease. Haematologica: the hematology journal. 2023; 108:1803-1816.

Kimbrel, NA; Ashley-Koch, AE; Qin, XJ; Lindquist, JH; Garrett, ME; Dennis, MF; Hair, LP; Huffman, JE; Jacobson, DA; Madduri, RK; et al. Identification of Novel, Replicable Genetic Risk Loci for Suicidal Thoughts and Behaviors Among US Military Veterans. JAMA Psychiatry. 2023; 80:135-145.

Knopp, MI; Warm, EJ; Weber, D; Kelleher, M; Kinnear, B; Schumacher, DJ; Santen, SA; Mendonça, E; Turner, L. AI-Enabled Medical Education: Threads of Change, Promising Futures, and Risky Realities Across Four Potential Future Worlds. JMIR Medical Education. 2023; 9:e50373.

Li, G; Bhattacharjee, A; Salomonis, N. Quantifying tumor specificity using Bayesian probabilistic modeling for drug target discovery and prioritization. 2023; 4:2023.03.03.530994.

Li, G; Song, B; Singh, H; Surya Prasath, VB; Leighton Grimes, H; Salomonis, N. Decision level integration of unimodal and multimodal single cell data with scTriangulate. Nature Communications. 2023; 14:406.

Lim, HW; Iwafuchi, M. Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome. Methods in Molecular Biology. : Springer US; Springer US; 2023.

Liu, X; Reigle, J; Sharma, M; Lopez-Nunez, O; Walters, TD; Collins, MH; Hyams, JS; Siddiqui, I; Denson, LA; Jegga, A; et al. 783 DEVELOPMENT OF AN OPTIMAL MACHINE LEARNING MODEL USING TREATMENT NAÏVE DIAGNOSTIC PATHOLOGY IMAGES TO PREDICT STEROID-FREE CLINICAL REMISSION AT ONE YEAR IN PEDIATRIC ULCERATIVE COLITIS. Gastroenterology. 2023; 164:s-170.

Mahajan, S; Alexander, A; Koenig, Z; Saba, N; Prasanphanich, N; Hildeman, DA; Chougnet, CA; DeFranco, E; Andorf, S; Tilburgs, T. Antigen-specific decidual CD8+ T cells include distinct effector memory and tissue-resident memory cells. JCI insight. 2023; 8:e171806.

Menéndez-Gutiérrez, MP; Porcuna, J; Nayak, R; Paredes, A; Niu, H; Núñez, V; Paranjpe, A; Gómez, MJ; Bhattacharjee, A; Schnell, DJ; et al. Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis. Blood. 2023; 141:592-608.

Milgrom, ZZ; Milgrom, DP; Han, Y; Hui, SL; Haggstrom, DA; Fisher, CS; Mendonca, EA. Breast Cancer Screening, Diagnosis, and Surgery during the Pre- and Peri-pandemic: Experience of Patients in a Statewide Health Information Exchange. Annals of Surgical Oncology. 2023; 30:2883-2894.

Milgrom, ZZ; Milgrom, DP; Han, Y; Hui, SL; Haggstrom, DA; Fisher, CS; Mendonca, EA. ASO Visual Abstract: Breast Cancer Screening, Diagnosis, and Surgery During the Pre- and Peri-pandemic-Experience of Patients in a Statewide Health Information Exchange. Annals of Surgical Oncology. 2023; 30:2895-2896.

Miller, RL; Schuh, H; Chandran, A; Aris, IM; Bendixsen, C; Blossom, J; Breton, C; Camargo, CA; Canino, G; Carroll, KN; et al. Incidence rates of childhood asthma with recurrent exacerbations in the US Environmental influences on Child Health Outcomes (ECHO) program. Journal of Allergy and Clinical Immunology. 2023; 152:84-93.

Minja, NW; Pulle, J; Rwebembera, J; De Loizaga, SR; Fall, N; Ollberding, N; Abrams, J; Atala, J; Kamarembo, J; Oyella, L; et al. Evaluating the implementation of a dynamic digital application to enable community-based decentralisation of rheumatic heart disease case management in Uganda: protocol for a hybrid type III effectiveness-implementation study. BMJ Open. 2023; 13:e071540.

Mitelpunkt, A; Stodola, MA; Vargus-Adams, J; Kurowski, BG; Greve, K; Bhatnagar, S; Aronow, B; Zahner, J; Bailes, AF. A big data approach to evaluate receipt of optimal care in childhood cerebral palsy. Disability and Rehabilitation. 2023; ahead-of-print:1-8.

Movassagh, H; Prunicki, M; Kaushik, A; Zhou, X; Dunham, D; Smith, EM; He, Z; Aleman Muench, GR; Shi, M; Weimer, AK; et al. Proinflammatory polarization of monocytes by particulate air pollutants is mediated by induction of trained immunity in pediatric asthma. Allergy: European Journal of Allergy and Clinical Immunology. 2023; 78:1922-1933.

Nguyen, V; Gao, C; Hochman, ML; Friedman, HI; Chen, EH; Wang, Y; Jegga, A; Nelson, JS; Tan, W. Abstract 14173: Generation and Characterization of Clinically Relevant Disease Models for Port Wine Birthmark Using Induced Pluripotent Stem Cells. Circulation. 2023; 148.

Nguyen, V; Gao, C; Hochman, ML; Kravitz, J; Chen, EH; Friedman, HI; Wenceslau, CF; Chen, D; Wang, Y; Nelson, JS; et al. Endothelial cells differentiated from patient dermal fibroblast-derived induced pluripotent stem cells resemble vascular malformations of port-wine birthmark. British Journal of Dermatology. 2023; 189:780-783.

Nguyen, V; Kravitz, J; Gao, C; Hochman, ML; Meng, D; Chen, D; Wang, Y; Jegga, AG; Nelson, JS; Tan, W. Perturbations of Glutathione and Sphingosine Metabolites in Port Wine Birthmark Patient-Derived Induced Pluripotent Stem Cells. Metabolites. 2023; 13:983.

Orieux, A; Ferté, T; Jouhet, V; Aaron, JR; Agapito, G; Albayrak, A; Albi, G; Alessiani, M; Alloni, A; Amendola, DF; et al. Acute respiratory distress syndrome after SARS-CoV-2 infection on young adult population: International observational federated study based on electronic health records through the 4CE consortium. Editor, Chen RJ. PloS one. 2023; 18:e0266985.

Palipana, AK; Vancil, A; Gecili, E; Rasnick, E; Ehrlich, D; Pestian, T; Andrinopoulou, ER; Afonso, PM; Keogh, RH; Ni, Y; et al. Social-environmental phenotypes of rapid cystic fibrosis lung disease progression in adolescents and young adults living in the United States. Environmental Advances. 2023; 14:100449.

Pathak, B; Lange, TE; Lampe, K; Hollander, E; Oria, M; Murphy, KP; Salomonis, N; Sertorio, M; Oria, M. Development of a Single-Neurosphere Culture to Assess Radiation Toxicity and Pre-Clinical Cancer Combination Therapy Safety. Cancers. 2023; 15:4916.

Pavicic, M; Walker, AM; Sullivan, KA; Lagergren, J; Cliff, A; Romero, J; Streich, J; Garvin, MR; Pestian, J; McMahon, B; et al. Using iterative random forest to find geospatial environmental and Sociodemographic predictors of suicide attempts. Frontiers in Psychiatry. 2023; 14:1178633.

Quinney, SK; Bies, RR; Grannis, SJ; Bartlett, CW; Mendonca, E; Rogerson, CM; Backes, CH; Shah, DK; Tillman, EM; Costantine, MM; et al. The MPRINT Hub Data, Model, Knowledge and Research Coordination Center: Bridging the gap in maternal-pediatric therapeutics research through data integration and pharmacometrics. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy. 2023; 43:391-402.

Raghavendra, PV S P; Charitha, C; Begum, KG; Prasath, VB S. Deep Learning-Based Skin Lesion Multi-class Classification with Global Average Pooling Improvement. Journal of Digital Imaging. 2023; 36:2227-2248.

Rogerson, C; Owora, A; He, T; Abu-Sultaneh, S; Carroll, A; Schleyer, T; Tu, W; Mendonca, E. 45: THE EFFECT OF HIGH-FLOW NASAL CANNULA ON HOSPITAL LENGTH OF STAY IN PEDIATRIC ASTHMA. Critical Care Medicine. 2023; 51:23.

Rogerson, C; Owora, A; He, T; Carroll, A; Schleyer, T; AbuSultaneh, S; Tu, W; Mendonca, E. High flow nasal cannula use is associated with increased hospital length of stay for pediatric asthma. Pediatric Pulmonology. 2023; 58:3046-3053.

Rogerson, C; Owora, A; Tu, W; Mendonca, E. The influence of social and environmental determinants of health on hospitalizations for pediatric asthma. Journal of Asthma (Informa). 2023; ahead-of-print:1-10.

Rossi, AP; Tremblay, S; Castro-Rojas, CM; Burg, AA; Roskin, KM; Gehman, JM; Rike-Shields, A; Alloway, RR; Brailey, P; Allman, D; et al. Effects of invivo CXCR4 blockade and proteasome inhibition on bone marrow plasma cells in HLA-sensitized kidney transplant candidates. American Journal of Transplantation. 2023; 23:759-775.

Sebastian, R; Jin, K; Pavon, N; Bansal, R; Potter, A; Song, Y; Babu, J; Gabriel, R; Sun, Y; Aronow, B; et al. Schizophrenia-associated NRXN1 deletions induce developmental-timing- and cell-type-specific vulnerabilities in human brain organoids. Nature Communications. 2023; 14:3770.

Shah, M; Jain, D; Prasath, S; Dufendach, K. Artificial intelligence in bronchopulmonary dysplasia- current research and unexplored frontiers. Pediatric Research. 2023; 93:287-290.

Shamimul Hasan, SM; Agasthya, G; Santel, D; Bhatnagar, S; Goethert, I; Glauser, T; Pestian, J. (2023) Application of Unified Medical Language System (UMLS) to Standardize Pediatric Drug Data. Institute of Electrical and Electronics Engineers (IEEE). 00:753-755.

Shi, T; Burg, AR; Caldwell, JT; Roskin, KM; Castro-Rojas, CM; Chukwuma, PC; Gray, GI; Foote, SG; Alonso, JA; Cuda, CM; et al. Single-cell transcriptomic analysis of renal allograft rejection reveals insights into intragraft TCR clonality. The Journal of Clinical Investigation. 2023; 133:e170191.

Siegel, R; Khoury, P; Spooner, SA; Stackpole, K; Allen, N; Kirk, S; Kharofa, R. Body Mass Index Increased at a Large Midwestern Children's Hospital During the COVID-19 Pandemic. Childhood Obesity. 2023; 19:364-372.

Solé-Navais, P; Flatley, C; Steinthorsdottir, V; Vaudel, M; Juodakis, J; Chen, J; Laisk, T; LaBella, AL; Westergaard, D; Bacelis, J; et al. Genetic effects on the timing of parturition and links to fetal birth weight. Nature Genetics. 2023; 55:559-567.

Song, B; Zhang, X; Bennett, S; Ma, S; Ferchen, K; Salomonis, N; Grimes, HL. High-throughput workflow leveraging spectral flow cytometry and CITE-seq to characterize human bone marrow across race and gender. Journal of immunology (Baltimore, Md. : 1950). 2023; 210:250.13.

Song, B; Zhang, X; Steele, H; Chou, C; Ferchen, K; Salomonis, N; Herro, R; Grimes, HL. Live bacterial ligands universally regulate mTOR activity but are not essential for homeostatic innate immunity. Journal of immunology (Baltimore, Md. : 1950). 2023; 210:65.05.

Sperotto, F; Gutiérrez-Sacristán, A; Makwana, S; Li, X; Rofeberg, VN; Cai, T; Bourgeois, FT; Omenn, GS; Hanauer, DA; Sáez, C; et al. Clinical phenotypes and outcomes in children with multisystem inflammatory syndrome across SARS-CoV-2 variant eras: a multinational study from the 4CE consortium. EClinicalMedicine. 2023; 64:102212.

Stiff, A; Nicolet, D; Fornerod, M; Kelly, B; Miller, K; Mrózek, K; Boateng, I; Kain, BN; Garfinkle, E; Hu, EY; et al. Genomic Profiles and Associated Survival Prognosticators in Black Patients with Acute Myeloid Leukemia. Blood. 2023; 142:837.

Su, EC; Dexheimer, JW; Kronk, CA; Snedecor, R; Popler, E; Thomas, A; Szczesniak, R; Gecili, E; Conard, L. 115. Automated Identification of Transgender and Gender Non-conforming patients from Electronic Health Record Data. Journal of Adolescent Health. 2023; 72:s66.

Tan, AL M; Getzen, EJ; Hutch, MR; Strasser, ZH; Gutiérrez-Sacristán, A; Le, TT; Dagliati, A; Morris, M; Hanauer, DA; Moal, B; et al. Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?. Journal of Biomedical Informatics. 2023; 139:104306.

Tan, BW L; Tan, BW Q; Tan, AL M; Schriver, ER; Gutiérrez-Sacristán, A; Das, P; Yuan, W; Hutch, MR; García Barrio, N; Pedrera Jimenez, M; et al. Long-term kidney function recovery and mortality after COVID-19-associated acute kidney injury: An international multi-centre observational cohort study. EClinicalMedicine. 2023; 55:101724.

Tsai, CY; Saito, T; Sarangdhar, M; Abu-El-Haija, M; Wen, L; Lee, B; Yu, M; Lipata, DA; Manohar, M; Barakat, MT; et al. A systems approach points to a therapeutic role for retinoids in asparaginase-associated pancreatitis. Science Translational Medicine. 2023; 15:eabn2110.

Van Camp, PJ; Prasath, VB S; Haslam, DB; Porollo, A. MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile. Microbiome. 2023; 11:223.

Verweyen, EL; Thakkar, K; Dhakal, S; Baker, E; Chetal, K; Schnell, D; Canna, S; Grom, AA; Salomonis, N; Schulert, GS. Population-level single-cell genomics reveals conserved gene programs in systemic juvenile idiopathic arthritis. The Journal of Clinical Investigation. 2023; 133:e166741.

Wang, C; Tu, Z; Cai, X; Wang, W; Davis, AK; Nattamai, K; Paranjpe, A; Dexheimer, P; Wu, J; Huang, FL; et al. A critical role of RUNX1 in governing megakaryocyte-primed hematopoietic stem cell differentiation. Blood Advances. 2023; 7:2590-2605.

Wang, H; Ma, T; Zhang, X; Chen, W; Lan, Y; Kuang, G; Hsu, SJ; He, Z; Chen, Y; Stewart, J; et al. CTC1 OB-B interaction with TPP1 terminates telomerase and prevents telomere overextension. Nucleic Acids Research. 2023; 51:4914-4928.

Wang, L; Rossi, RM; Chen, X; Chen, J; Runyon, J; Chawla, M; Miller, D; Forney, C; Lynch, A; Zhang, X; et al. A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth. BMC Medicine. 2023; 21:258.

Warner, EN; Ammerman, RT; Glauser, TA; Pestian, JP; Agasthya, G; Strawn, JR. Developmental Epidemiology of Pediatric Anxiety Disorders. Child and Adolescent Psychiatric Clinics of North America. 2023; 32:511-530.

Wiley, K; Blackburn, J; Mendonca, E; Menachemi, N; De Groot, M; Vest, JR. Associations between Outpatient Laboratory Test Age and Healthcare Utilization in Type 2 Diabetes Care. Journal of Diabetes and Metabolic Disorders. 2023; 22:1319-1326.

Wissel, BD; Greiner, HM; Glauser, TA; Mangano, FT; Holland-Bouley, KD; Zhang, N; Szczesniak, RD; Santel, D; Pestian, JP; Dexheimer, JW. Automated, machine learning-based alerts increase epilepsy surgery referrals: A randomized controlled trial. Epilepsia. 2023; 64:1791-1799.

Xia, S; Gong, H; Wang, YK; Liu, L; Zhao, YC; Guo, L; Zhang, BK; Sarangdhar, M; Noguchi, Y; Yan, M. Pneumocystis jirovecii pneumonia associated with immune checkpoint inhibitors: A systematic literature review of published case reports and disproportionality analysis based on the FAERS database. Frontiers in Pharmacology. 2023; 14:1129730.

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